Staff information

Biography

Dr. Marquez is a Senior Computer Scientist at Pacific Northwest National Laboratory (PNNL). At PNNL currently he manages the Advanced Measurement Lab (AML) for the Center for Advanced Technology Evaluation (CENATE). He is the PI for DOE's Advanced Memory to Support AI for Science. He is also PI and/or performer on several projects related to memory performance analysis or cyber security. Previously at PNNL, he was lead investigator for the Energy Smart Data Center project and PI on power and performance analysis compiler tools for the Center for Adaptive Software Systems. A high performing tasked based RTS was released to the public under two DOE ASCR XStack projects (Brandywine, Trileika) where he was Co-PI. Dr. Marquez has worked in the past as a compiler and computer architect on several academic high performance execution model projects (EARTH) and (CARE), on US superconductive supercomputer design studies (HTMT) - invited to present to JASON advisory group, on European Supercomputer design studies (GENESIS) and on the development and construction of the German supercomputers SUPRENUM and MANNA. He has published over 50 peer reviewed papers in journals and conferences in the fields of hardware-, software- and systems- architecture, as well as IT infrastructure.

Research Interests

• Technical Team Management
• Computer Architecture
• Compilers
• Runtime Systems
• Energy Efficiency
• Cyber Security
• Performance Analysis
• Algorithmic Design

Education and Credentials

• Ph.D., Electrical and Computer Engineering, University of Delaware, 2004
• M.S., Electrical Engineering, Technical University of Berlin, 1990

Affiliations and Professional Service

• Institute of Electrical and Electronics Engineers, Inc. (IEEE)
• Association of Computing Machinery (ACM)

PNNL Publications

2023

• Dutta S., H. Naghibijouybari, A. Gupta, N. Abu-Ghazaleh, A. Marquez, and K.J. Barker. 2023. "Spy in the GPU-box: Covert and Side Channel Attacks on Multi-GPU System." In Proceedings of the 50th Annual International Symposium on Computer Architecture (ISCA '23), June 17--21, 2023, Orlando, FL, 1-13, Art. No. 45. New York, New York:Association for Computing Machinery. PNNL-SA-184963. doi:10.1145/3579371.3589080
• Gioiosa R., E. Apra, A. Marquez, A.R. Panyala, R.A. Ashraf, and L. Guo. 2023. Navier: Dataflow Architecture for Computation Chemistry. PNNL-34901. Richland, WA: Pacific Northwest National Laboratory. Navier: Dataflow Architecture for Computation Chemistry

2022

• Kilic O.O., N.R. Tallent, Y. Suriyakumar, C. Xie, A. Marquez, and S. Eranian. 2022. "MemGaze: Rapid and Effective Load-Level Memory Trace Analysis." In IEEE International Conference on Cluster Computing (CLUSTER 2022), September 5-8, 2022, Heidelberg, Germany, 484-495. Piscataway, New Jersey:IEEE. PNNL-SA-174803. doi:10.1109/CLUSTER51413.2022.00058
• Marquez A., N.R. Tallent, O.O. Kilic, C. Xie, and Y. Suriyakumar. 2022. Fixing Amdahl's Law within the Limits of Accelerated Systems: FALLACY. PNNL-33259. Richland, WA: Pacific Northwest National Laboratory. Fixing Amdahl's Law within the Limits of Accelerated Systems: FALLACY
• Ranganath K., J.S. Firoz, J.D. Suetterlein, J.B. Manzano Franco, A. Marquez, M.V. Raugas, and D. Wong. 2022. "LC-MEMENTO: A Memory Model for Accelerated Architectures." In The 34th International Workshop on Languages and Compilers for Parallel Computing (LCPC 2021), October 13-14, 2021. Lecture Notes in Computer Science, edited by X. Li and S. Chandrasekaran, 13181, 67-82. PNNL-SA-166245. doi:10.1007/978-3-030-99372-6_5

2021

• Dutta S.B., H. Naghibijouybari, N.B. Abu-Ghazaleh, A. Marquez, and K.J. Barker. 2021. "Leaky Buddies: Cross-Component Covert Channels on Integrated CPU-GPU Systems." In ACM/IEEE 48th Annual International Symposium on Computer Architecture (ISCA 2021), June 14-18, 2021, Valencia, Spain, 972-984. Piscataway, New Jersey:IEEE. PNNL-SA-166435. doi:10.1109/ISCA52012.2021.00080
• Lumsdaine A., J.S. Firoz, J.B. Manzano Franco, A. Marquez, J.D. Suetterlein, M.J. Zalewski, and T. Liu. 2021. NWGraph: A library of generic graph algorithms and data structures in C++20. PNNL-32018. Richland, WA: Pacific Northwest National Laboratory. NWGraph: A library of generic graph algorithms and data structures in C++20
• Tan C., C. Xie, T. Geng, A. Marquez, A. Tumeo, K.J. Barker, and A. Li. 2021. "ARENA: Asynchronous Reconfigurable Accelerator Ring to Enable Data-Centric Parallel Computing." IEEE Transactions on Parallel and Distributed Systems 32, no. 12:2880-2892. PNNL-SA-152862. doi:10.1109/TPDS.2021.3081074

2020

• Suetterlein J.D., J.B. Manzano Franco, A. Marquez, and G.R. Gao. 2020. "On the Marriage of Asynchronous Many Task Runtimes and Big Data: A Glance." In Proceedings of the 27th International Conference on High Performance Computing, Data, and Analytics (HiPC 2020), December 16-19, 2020, Pune, India, 233-242. Piscataway, New Jersey:IEEE. PNNL-SA-157240. doi:10.1109/HiPC50609.2020.00037

2019

• Castellana V.G., M. Drocco, J.T. Feo, J. Firoz, T.A. Kanewala, A. Lumsdaine, and J.B. Manzano Franco, et al. 2019. "A Parallel Graph Environment for Real-World Data Analytics Workflows." In Design, Automation & Test in Europe Conference & Exhibition (DATE 2019), March 25-29, 2019, Florence, Italy, 1313-1318. Piscataway, New Jersey:IEEE. PNNL-SA-140268. doi:10.23919/DATE.2019.8715196

2017

• Landwehr J.B., J.D. Suetterlein, J.B. Manzano Franco, A. Marquez, K.J. Barker, and G.R. Gao. 2017. "Designing Scalable Distributed Memory Models: A Case Study." In Proceedings of the Computing Frontiers Conference (CF 2017), May 15-17, 2017, Siena, Italy, 174-182. New York, New York:ACM. PNNL-SA-124960. doi:10.1145/3075564.3077425

2016

• Landwehr J.B., J.D. Suetterlein, A. Marquez, J.B. Manzano Franco, and G.R. Gao. 2016. "Application Characterization at Scale: Lessons learned from developing a distributed Open Community Runtime system for High Performance Computing." In Proceedings of the ACM International Conference on Computing Frontiers (CF 2016), May 16-28, 2016, Como, Italy. New York, New York:ACM. PNNL-SA-116663. doi:10.1145/2903150.2903166
• Suetterlein J.D., J.B. Landwehr, A. Marquez, J.B. Manzano Franco, and G.R. Gao. 2016. "Asynchronous Runtimes in Action: An Introspective Framework for a Next Gen Runtime." In IEEE International Parallel and Distributed Processing Symposium Workshops, May 23-27, 2016 Chicago, Illinois, 1744-1751. Piscataway, New Jersey:IEEE. PNNL-SA-116477. doi:10.1109/IPDPSW.2016.191
• Suetterlein J.D., J.B. Landwehr, A. Marquez, J.B. Manzano Franco, and G.R. Gao. 2016. "Extending the Roofline Model for Asynchronous Many-Task Runtimes." In IEEE International Conference on Cluster Computing (CLUSTER 2016), Septemer 12-16, 2016, Taipei, Taiwan, 493-496. Los Alamitos, California:IEEE Computer Society. PNNL-SA-119731. doi:10.1109/CLUSTER.2016.47
• Tallent N.R., K.J. Barker, R. Gioiosa, A. Marquez, G. Kestor, S. Song, and A. Tumeo, et al. 2016. "Assessing Advanced Technology in CENATE." In Proceedings of the IEEE International Conference on Networking, Architecture, and Storage (NAS 2016), August 8-10, 2016, Long Beach, California. Piscataway, New Jersey:IEEE. PNNL-SA-119257. doi:10.1109/NAS.2016.7549392
• Tan J., S. Song, K. Yan, X. Fu, A. Marquez, and D.J. Kerbyson. 2016. "Combating the Reliability Challenge of GPU Register File at Low Supply Voltage." In Proceedings of the 25th International Conference on Parallel Architectures and Compilation (PACT '16), September 11-15, 2016, Haifa, Israel, 3-15. New York, New York:ACM. PNNL-SA-119484. doi:10.1145/2967938.2967951

2015

• Shrestha S., G.R. Gao, J.B. Manzano Franco, A. Marquez, and J.T. Feo. 2015. "Locality Aware Concurrent Start for Stencil Applications." In IEEE/ACM International Symposium on Code Generation and Optimization (CGO 2015), February 7-11, 2015, San Francisco, California, 157-166. Piscataway, New Jersey:IEEE. PNNL-SA-108612. doi:10.1109/CGO.2015.7054196
• Shrestha S., J.B. Manzano Franco, A. Marquez, J.T. Feo, and G.R. Gao. 2015. "Jagged Tiling for Intra-tile Parallelism and Fine-Grain Multithreading." In Languages and Compilers for Parallel Computing: 27th International Workshop (LCPC 2014), September 15-17, 2014, Hillsboro, Oregon. Lecture Notes in Computer Science, edited by J Brodman and P Tu, 8967, 161-175. New York, New York:Springer. PNNL-SA-104854. doi:10.1007/978-3-319-17473-0_11
• Shrestha S., J.B. Manzano Franco, A. Marquez, S. Zuckerman, S. Song, and G.R. Gao. 2015. "Gregarious Data Re-structuring in a Many Core Architecture." In IEEE 17th International Conference on High Performance Computing and Communications (HPCC), 2015 IEEE 7th International Symposium on Cyberspace Safety and Security (CSS), 2015 IEEE 12th International Conference on Embedded Software and Systems (ICESS), August 24-26, 2015, New York, 712-720. Piscataway, New Jersey:IEEE. PNNL-SA-110971. doi:10.1109/HPCC-CSS-ICESS.2015.291
• You Y., H. Fu, S. Song, A. Randles, D.J. Kerbyson, A. Marquez, and G. Yang, et al. 2015. "Scaling Support Vector Machines On Modern HPC Platforms." Journal of Parallel and Distributed Computing 76. PNNL-SA-105673. doi:10.1016/j.jpdc.2014.09.005

2014

• Marquez A., J.B. Manzano Franco, S. Song, B. Meister, S. Shrestha, T. St. John, and G.R. Gao. 2014. "ACDT: Architected Composite Data Types Trading-in Unfettered Data Access for Improved Execution." In The 20th IEEE International Conference on Parallel and Distributed Systems (ICPADS 2014), December 16-19, 2015, Hsinchu, Taiwan, 289-297. Piscataway, New Jersey:IEEE. PNNL-SA-105822. doi:10.1109/PADSW.2014.7097820
• You Y., S. Song, H. Fu, A. Marquez, M. Mehri Dehanavi, K.J. Barker, and K. Cameron, et al. 2014. "MIC-SVM: Designing A Highly Efficient Support Vector Machine For Advanced Modern Multi-Core and Many-Core Architectures." In IEEE 28th International Parallel and Distributed Processing Symposium (IPDPS 2014), May 19-23, 2014, Phoenix, Arizona, 809-818. Los Alamitos, California:IEEE Computer Society. PNNL-SA-102817. doi:10.1109/IPDPS.2014.88

2013

• Sego L.H., A. Marquez, A. Rawson, A. Rawson, T. Cader, K.M. Fox, and W.I. Gustafson, et al. 2013. "Implementing the Data Center Energy Productivity Metric in a High Performance Computing Data Center." In Design Technologies for Green and Sustainable Computing Systems, edited by PP Pande, A Ganguly and K Chakrabarty. 93-116. New York, New York:Springer. PNNL-SA-91844.
• Vishnu A., S. Song, A. Marquez, K.J. Barker, D.J. Kerbyson, K. Cameron, and P. Balaji. 2013. "Designing Energy Efficient Communication Runtime Systems: A View from PGAS Models." Journal of Supercomputing 63, no. 3:691-709. PNNL-SA-80095. doi:10.1007/s11227-011-0699-9

2012

• Chin G., A. Marquez, S. Choudhury, and J.T. Feo. 2012. "Scalable Triadic Analysis of Large-Scale Graphs: Multi-Core vs. Multi-Processor vs. Multi-Threaded Shared Memory Architectures." In Proceedings of the 2012 IEEE 24th International Symposium on Computer Architecture and High Performance Computing, (SBAC-PAD) October 24-26, 2012, New York, NY, 163-170. Los Alamitos, California:IEEE Computer Society. PNNL-SA-78610. doi:10.1109/SBAC-PAD.2012.39
• Evans J., G. Sandeep, K. Karavanic, A. Marquez, and G. Varsamopoulos. 2012. "Evaluating Performance, Power, and Cooling in High Performance Computing (HPC) Data Centers." In Handbook of Energy-Aware and Green Computing, edited by I Ahmad and S Ranka. Boca Raton, Florida:Chapman and Hall/CRC. PNNL-SA-77075.
• Sego L.H., A. Marquez, A. Rawson, A. Rawson, T. Cader, K.M. Fox, and W.I. Gustafson, et al. 2012. "Implementing the Data Center Energy Productivity Metric." ACM Journal on Emerging Technologies in Computing Systems 8, no. 4:Article No. 30. PNNL-SA-80653. doi:10.1145/2367736.2367741
• Shrestha S., C. Su, A.M. White, J.B. Manzano Franco, A. Marquez, and J.T. Feo. 2012. "MODA A Framework for Memory Centric Performance Characterization." In Workshop on High-performance Infrastructure for Scalable Tools (WHIST), June 29, 2012, Venice, Italy. New York, New York:Association for Computing Machinery. PNNL-SA-91114.

2011

• Chin G., S. Choudhury, L.J. Kangas, S.A. McFarlane, and A. Marquez. 2011. "Evaluating In-Clique and Topological Parallelism Strategies for Junction Tree-Based Bayesian Inference Algorithm on the Cray XMT." In Proceedings of the IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum (IPDPSW 2011), May 16-20, 2011, Anchorage, Alaska, 1710-1719. Piscataway, New Jersey:IEEE. PNNL-SA-77562. doi:10.1109/IPDPS.2011.328
• Knapp R., K. Karavanic, S. Krishnamoorthy, and A. Marquez. 2011. "Power- and Cooling-Aware Parallel Performance Diagnosis." In Parallel and Distributed Computing and Systems (PDCS 2011), December 14-16, 2011, Dallas, Texas, Paper No. 757-114. Anaheim, California:ACTA Press. PNNL-SA-84331. doi:10.2316/P.2011.757-114
• Minnich R.G., C.L. Janssen, S. Krishnamoorthy, A. Marquez, M. Gokhale, P. Sadayappan, and E. Van Hensbergen, et al. 2011. "Fault Oblivious eXascale Whitepaper." In Proceedings of the 1st International Workshop on Runtime and Operating Systems for Supercomputers (ROSS 2011), held in conjunction with the 25th International Conference on Supercomputing, May 31, 2011, Tucson, Arizona, edited by K Iskra and T Hoefler, 17-24. New York, New York:Association for Computing Machinery. PNNL-SA-79579. doi:10.1145/1988796.1988800

2010

• Chin G., S. Choudhury, L.J. Kangas, S.A. McFarlane, and A. Marquez. 2010. "Fault Detection in Distributed Climate Sensor Networks using Dynamic Bayesian Networks." In Proceedings of the 6th IEEE International Conference on e-Science (e-Science 2010), December 7-10, 2010, Brisbane, Australia, 121-128. Los Alamitos, California:IEEE Computer Society. PNNL-SA-74315. doi:10.1109/eScience.2010.22
• Shah A.R., J.N. Adkins, D.J. Baxter, W.R. Cannon, D. Chavarría-Miranda, S. Choudhury, and I. Gorton, et al. 2010. "Applications in Data-Intensive Computing." In Advances in Computers, edited by M Zelkowitz. 1-70. San Diego, California:Academic Press Inc. PNNL-SA-67358.
• Vishnu A., S. Song, A. Marquez, K.J. Barker, D.J. Kerbyson, K. Cameron, and P. Balaji. 2010. "Designing Energy Efficient Communication Runtime Systems for Data Centric Programming Models." In IEEE/ACM Internationall Conference on Green Computing and Communications (GreenCom 2010) and the International Conference on Cyber, Physical and Social Computing (CPSCom 2010), December 18-20, 2010, Hangzhou, China, edited by P Zhu, et al, 229-236. Piscatawy, New Jersey:Institute of Electrical and Electronics Engineers, Inc. PNNL-SA-74309. doi:10.1109/GreenCom-CPSCom.2010.133

2009

• Cader T., V. Sorell,, L. Westra, and A. Marquez. 2009. "Liquid Cooling in Data Centers." ASHRAE Transactions 115, no. pt. 1:231-241. PNNL-SA-58737.
• Chin G., A. Marquez, S. Choudhury, and K. Maschhoff. 2009. "Implementing and Evaluating Multithreaded Triad Census Algorithms on the Cray XMT." In IEEE International Symposium on Parallel & Distributed Processing (IPDPS 2009), May 25-29, Rome, Italy. Piscataway, New Jersey:IEEE. PNNL-SA-64273. doi:10.1109/IPDPS.2009.5161109
• Scherrer C., T.R. Shippert, and A. Marquez. 2009. "Accelerating Numerical Calculation on the Cray XMT." In Proceedings of the IEEE International Symposium on Parallel & Distributed Processing (IPDPS 2009), May 23-29, 2009, Rome, Italy. Los Alamitos, California:IEEE Computer Society. PNNL-SA-64423.
• Sisk D.R., M.A. Khaleel, A. Marquez, D.D. Hatley, T. Cader, and R.R. Schmidt. 2009. "Real-time Data Center Energy Efficiency At Pacific Northwest National Laboratory." ASHRAE Transactions 115, no. Part I:242-253. PNNL-SA-60170.
• Tuma P., A. Marquez, L.H. Sego, R. Schmidt, and T. Cader. 2009. "Energy Efficient and Sustainable HPC at Pacific Northwest National Laboratory." In Laboratories for the 21st Century (Labs21) Annual Conference, September 16-18, 2008, San Jose, California. Arlington, Virginia:International Institute for Sustainable Laboratories. PNNL-SA-68610.
• Villa O., D. Chavarría-Miranda, V. Gurumoorthi, A. Marquez, and S. Krishnamoorthy. 2009. "Effects of floating-point non-associativity on numerical computations on massively multithreaded systems." In Cray User Group Meeting (CUG 2009), May 4-7, 2009, Atlanta, Georgia. Corvallis, Oregon:Cray User Group, Inc. PNNL-SA-65946.

2008

• Beckman M.T., and A. Marquez. 2008. "PNNL streamlines energy-guzzling computers." DOE Pulse 272, no. October 6, 2008:2. PNNL-SA-62589.
• Chavarría-Miranda D., A. Marquez, J. Nieplocha, K.J. Maschhoff, and C. Scherrer. 2008. "Early Experience with Out-of-Core Applications on the Cray XMT." In IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2008., 2379-2386. Piscataway, New Jersey:IEEE. PNNL-SA-58480. doi:10.1109/IPDPS.2008.4536360
• Chavarría-Miranda D., D.K. Gracio, A. Marquez, J. Nieplocha, C. Scherrer, and H.J. Sofia. 2008. "Cray XMT Brings New Energy to High-Performance Computing." SciDAC Review Fall 2008, no. 9:36-41. PNNL-SA-60145.
• Nieplocha J., D. Chavarría-Miranda, V. Tipparaju, Z. Huang, and A. Marquez. 2008. "A parallel WLS state estimator on shared memory computers." In Proceedings of The 8th International Power Engineering Conference, IPEC 2007, 395-400. Piscataway, New Jersey:IEEE. PNNL-SA-57075.

2007

• Cader T., L. Westra, and A. Marquez. 2007. "Technologies for the Energy Efficient Data Center." In Proceedings of ASME InterPACK '07 (IPACK2007) July 8-12, 2007, Vancouver, British Columbia, CANADA, 12 pages. New York, New York:ASME International. PNNL-SA-55228.
• Cader T., L.J. Westra, A. Marquez, H.J. Mcallister, and K.M. Regimbal. 2007. "Performance of a Rack of Liquid-Cooled Servers." ASHRAE Transactions 113, no. Part 1:101-114. PNNL-SA-56301.
• Chavarría-Miranda D., and A. Marquez. 2007. "Assessing the Potential of Hybrid HPC Systems for Scientific Applications: a case study." In Proceedings of the 4th ACM International Conference on Computing Frontiers, May 7-9, 2007, Ischia, Italy, 173-182. New York, New York:ACM Press. PNNL-SA-52294. doi:10.1145/1242531.1242558
• Nieplocha J., A. Marquez, F. Petrini, and D. Chavarría-Miranda. 2007. "Unconventional Architectures for High-Throughput Sciences." SciDAC Review. PNNL-SA-55797. Unconventional Architectures for High-Throughput Sciences
• Nieplocha J., A. Marquez, J. Feo, D. Chavarría-Miranda, G. Chin, C. Scherrer, and N. Beagley. 2007. "Evaluating the potential of multithreaded platforms for irregular scientific computations." In Proceedings of 4th ACM International Conference on Computing Frontiers, May 7-9, 2007, Ischia, Italy, 47 - 58. New York, New York:ACM Press. PNNL-SA-53303. doi:10.1145/1242531.1242541
• Nieplocha J., A. Marquez, J. Feo, D. Chavarría-Miranda, G. Chin, C. Scherrer, and N. Beagley. 2007. "Evaluating the Potential of Multithreaded Platforms for Irregular Scientific Computations." In Proceedings of the 4th International Conference on Computing Frontiers, Ischia, Italy, May 07 - 09, 2007, 47-58. New York, New York:ACM Press. PNNL-SA-53832.
• Scherrer C., N. Beagley, J. Nieplocha, A. Marquez, J. Feo, and D. Chavarría-Miranda. 2007. "Probability Convergence in a Multithreaded Counting Application." In Parallel and Distributed Processing Symposium (IPDPS 2007), 1-5. Piscataway, New York:IEEE. PNNL-SA-53295. doi:10.1109/IPDPS.2007.370688

2006

• Nieplocha J., A. Marquez, V. Tipparaju, D. Chavarría-Miranda, R.T. Guttromson, and Z. Huang. 2006. "Towards Efficient Parallel State Estimation Solvers on Shared Memory Computers." In Highspeed Computation Panel of the Proceedings of the 2006 IEEE Power Engineering Society General Meeting, 18-22 June 2006, 1-5. Piscataway, New Jersey:IEEE. PNNL-SA-48162.