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Biological Sciences Staff information

Jim Fredrickson

Jim Fredrickson

Biological Sciences Division
Manager
Pacific Northwest National Laboratory
PO Box 999
MSIN: J4-16
Richland, WA 99352
509/371-6943

Biography

Dr. Fredrickson specializes in Microbial Ecology and Environmental Microbiology. Since joining Pacific Northwest National Laboratory in 1985, he has focused his research efforts in subsurface microbiology and biogeochemistry. He has been responsible for laboratory and field research programs investigating the microbial ecology and biogeochemistry of geologically diverse subsurface environments and is recognized nationally and internationally for these efforts. He is currently a Laboratory Fellow in the Biological Sciences Division at PNNL.

Dr. Fredrickson has also served as Subprogram Coordinator for the U.S. Department of Energy's Subsurface Science Program from 1991 to the present. In this role, he coordinated the technical aspects of DOE's Deep Subsurface Microbiology Subprogram at the national level and assists DOE's Program Manager in setting programmatic research directions. In 2005 Dr. Fredrickson was appointed Chief Scientist for the Genomics: GTL program. In this capacity, Dr. Fredrickson served as a spokesperson for the GTL program to the science community.

Research Interests

  • Microbial ecology
  • Environmental microbiology
  • Subsurface microbiology and biogeochemistry

Education and Credentials

  • B.S. Soil Sciences, University of Wisconsin-Stevens Point, 1978
  • M.S. Soil Sciences, Washington State University, 1982
  • Ph.D. Soil Microbiology,Washington State University, 1984

Affiliations and Professional Service

  • Editor-in-Chief of Microbial Ecology (1995-2005)
  • Editorial Board Member Environmental Microbiology
  • Past Editorial Board Member of Applied and Environmental Microbiology
  • Served as Chairman of Division N (Microbial Ecology), American Society for Microbiology (1995-1997)
  • Divisional Group III Representative for the American Society for Microbiology (1998-2000)
  • Ad hoc reviewer for Science, Geochimica et Cosmochimica Acta, Geomicrobiology Journal, Journal of Bacteriology, Soil Biology and Biochemistry, Environmental Science and Technology, Canadian Journal of Microbiology, Chemical Geology and Molecular Ecology;
  • 1998 ASM Foundation Lecturer
  • Member of the American Society for Microbiology
  • Member of the Organizing Committee for the 1993 International Conference on Subsurface Microbiology, Bath, England and the 1996 International Symposium on Subsurface Microbiology, Davos, Switzerland
  • 1996 DOE-Environmental Management Science Program, Bioremediation Section Peer-review panel

Awards and Recognitions

  • 1985 Emil Truog Award, Outstanding Ph.D. Thesis in the Field of Soil Science; Soil Science Society of America
  • 1985 Washington State University Outstanding Thesis Award
  • Adjunct Graduate Faculty Appointment, Washington State University - served on five graduate committees to date
  • 1991 U.S. DOE Certificate of Appreciation for "Outstanding Research in Microbiology and for Program Planning that Contributed to the Development of a Fundamental Research Program in Biodegradation and Microbial Physiology"
  • Adjunct Faculty Appointment, University of Idaho
  • American Society for Microbiology Foundation Lecturer, 1998-2000
  • Member, American Academy of Microbiology, 1999
  • Advisory Committee Member, UCLA-DOE Institute for Genomics and Proteomics
  • Co-chaired a colloquium sponsored by the American Academy of Microbiology, 2004. Systems Microbiology: Beyond Microbial Genomics (report published by the American Academy of Microbiology)
  • Member of the Committee on the Astrobiology Strategy for the Exploration of Mars (2006-2007)
  • Selection Committee 2006 Ernest Orlando Lawrence Award in Environmental Science & Technology
  • Fellow, American Association for the Advancement of Science

PNNL Publications

2014

  • Cole JK, JR Hutchison, RS Renslow, YM Kim, WB Chrisler, HE Engelmann, A Dohnalkova, D Hu, TO Metz, JK Fredrickson, and SR Lindemann. 2014. "Phototrophic Biofilm Assembly in Microbial-Mat-Derived Unicyanobacterial Consortia: Model Systems for the Study of Autotroph-Heterotroph Interactions." Frontiers in Microbiology 5:Article No. 109.  doi:10.3389/fmicb.2014.00109
  • Edwards M, N Baiden, A Johs, SJ Tomanicek, L Liang, L Shi, JK Fredrickson, JM Zachara, AJ Gates, JN Butt, D Richardson, and TA Clarke. 2014. "The X-ray crystal structure of Shewanella oneidensis OmcA reveals new insight at the microbe-mineral interface." FEBS Letters 588(10):1886-1890.  doi:10.1016/j.febslet.2014.04.013

2013

  • Zachara JM, PE Long, J Bargar, JA Davis, PM Fox, JK Fredrickson, MD Freshley, A Konopka, C Liu, JP McKinley, ML Rockhold, KH Williams, and SB Yabusaki. 2013. "Persistence of uranium groundwater plumes: Contrasting mechanisms at two DOE sites in the groundwater-river interaction zone." Journal of Contaminant Hydrology 147:45-72.  doi:10.1016/j.jconhyd.2013.02.001
  • Lindemann SR, JJ Moran, JC Stegen, RS Renslow, JR Hutchison, JK Cole, A Dohnalkova, J Tremblay, K Singh, S Malfatti, F Chen, S Tringe, H Beyenal, and JK Fredrickson. 2013. "The Epsomitic Phototrophic Microbial Mat of Hot Lake, Washington: Community Structural Responses to Seasonal Cycling." Frontiers in Microbiology 4:323.  doi:10.3389/fmicb.2013.00323
  • Melnicki MR, GE Pinchuk, EA Hill, LA Kucek, S Stolyar, JK Fredrickson, A Konopka, and AS Beliaev. 2013. "Feedback-Controlled LED Photobioreactor for Photophysiological Studies of Cyanobacteria." Bioresource Technology 134:127-133.  doi:10.1016/j.biortech.2013.01.079
  • Renslow RS, JT Babauta, A Dohnalkova, MI Boyanov, KM Kemner, PD Majors, JK Fredrickson, and H Beyenal. 2013. "Metabolic spatial variability in electrode-respiring Geobacter sulfurreducens biofilms." Energy & Environmental Science 6(6):1827-1836.  doi:10.1039/c3ee40203g
  • Renslow RS, JT Babauta, AP Kuprat, J Schenk, C Ivory, JK Fredrickson, and H Beyenal. 2013. "Modeling biofilms with dual extracellular electron transfer mechanisms." Physical Chemistry Chemical Physics. PCCP 15(44):19262-19283.  doi:10.1039/c3cp53759e
  • Shi Z, JM Zachara, Z Wang, L Shi, and JK Fredrickson. 2013. "Reductive Dissolution of Goethite and Hematite by Reduced Flavins." Geochimica et Cosmochimica Acta 121:139-154.  doi:10.1016/j.gca.2013.05.039
  • Song HS, D Ramkrishna, GE Pinchuk, AS Beliaev, A Konopka, and JK Fredrickson. 2013. "Dynamic Modeling of Aerobic Growth of Shewanella oneidensis. Predicting Triauxic Growth, Flux Distributions and Energy Requirement for Growth." Metabolic Engineering 15:25-33.  doi:10.1016/j.ymben.2012.08.004
  • Stegen JC, X Lin, JK Fredrickson, X Chen, DW Kennedy, CJ Murray, ML Rockhold, and A Konopka. 2013. "Quantifying Community Assembly Processes and Identifying Features that Impose Them." The ISME Journal 7:2069-2079.  doi:10.1038/ismej.2013.93
  • Wang Y, PC Sevinc, SM Belchik, JK Fredrickson, L Shi, and HP Lu. 2013. "Single-Cell Imaging and Spectroscopic Analyses of Cr(VI) Reduction on the Surface of Bacterial Cells." Langmuir 29(3):950-956.  doi:10.1021/la303779y
  • White GF, Z Shi, L Shi, Z Wang, A Dohnalkova, MJ Marshall, JK Fredrickson, JM Zachara, JN Butt, D Richardson, and TA Clarke. 2013. "Rapid electron exchange between surface-exposed bacterial cytochromes and Fe(III) minerals." Proceedings of the National Academy of Sciences of the United States of America 110(16):6346-6351.  doi:10.1073/pnas.1220074110

2012

  • Cao B, PD Majors, B Ahmed, RS Renslow, CP Sylvia, L Shi, S Kjelleberg, JK Fredrickson, and H Beyenal. 2012. "Biofilm Shows Spatially Stratified Metabolic Responses to Contaminant Exposure." Environmental Microbiology 14(11):2901-2910.  doi:10.1111/j.1462-2920.2012.02850.x
  • Zachara JM, BN Bjornstad, JN Christensen, MS Conrad, JK Fredrickson, MD Freshley, R Haggerty, GE Hammond, DB Kent, A Konopka, PC Lichtner, C Liu, JP McKinley, CJ Murray, ML Rockhold, Y Rubin, VR Vermeul, RJ Versteeg, and C Zheng. 2012. Multi-Scale Mass Transfer Processes Controlling Natural Attenuation and Engineered Remediation: An IFRC Focused on Hanford's 300 Area Uranium Plume January 2011 to January 2012PNNL-21169, Pacific Northwest National Laboratory, Richland, WA. 
  • Ahmed B, B Cao, B Mishra, MI Boyanov, KM Kemner, JK Fredrickson, and H Beyenal. 2012. "Immobilization of U(VI) from Oxic Groundwater by Hanford 300 Area Sediments and Effects of Columbia River Water." Water Research 46(13):3989-3998.  doi:10.1016/j.watres.2012.05.027
  • Ahmed B, B Cao, JS McLean, T Ica, A Dohnalkova, O Istanbullu, A Paksoy, JK Fredrickson, and H Beyenal. 2012. "Fe(III) Reduction and U(VI) Immobilization by Paenibacillus sp. Strain 300A, Isolated from Hanford 300A Subsurface Sediments." Applied and Environmental Microbiology 78(22):8001-8009.  doi:10.1128/AEM.01844-12
  • Breuer M, PP Zarzycki, L Shi, T Clarke, M Edwards, JN Butt, DJ Richardson, JK Fredrickson, JM Zachara, J Blumberger, and KM Rosso. 2012. "Molecular Structure and Free Energy Landscape for Electron Transport in the Deca-Heme Cytochrome MtrF." Biochemical Society: Transactions 40(6):1198-1203.  doi:10.1042/BST20120139
  • Edwards M, A Hall, L Shi, JK Fredrickson, JM Zachara, JN Butt, D Richardson, and TA Clarke. 2012. "The Crystal Structure of the Extracellular 11-heme Cytochrome UndA Reveals a Conserved 10-heme Motif and Defined Binding Site for Soluble Iron Chelates." Structure 20(7):1275-1284.  doi:10.1016/j.str.2012.04.016
  • Edwards M, JK Fredrickson, JM Zachara, D Richardson, and TA Clarke. 2012. "Analysis of Structural MtrC Models Based on Homology with the Crystal Structure of MtrF." Biochemical Society: Transactions 40(6):1181-1185.  doi:10.1042/BST20120132
  • Lee JH, JK Fredrickson, RK Kukkadapu, MI Boyanov, KM Kemner, X Lin, DW Kennedy, BN Bjornstad, A Konopka, DA Moore, CT Resch, and JL Phillips. 2012. "Microbial Reductive Transformation of Phyllosilicate Fe(III) and U(VI) in Fluvial Subsurface Sediments." Environmental Science & Technology 46(7):3721-3730.  doi:10.1021/es204528m
  • Lin X, DW Kennedy, JK Fredrickson, BN Bjornstad, and A Konopka. 2012. "Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site." Environmental Microbiology 14(2):414-425.  doi:10.1111/j.1462-2920.2011.02659.x
  • Lin X, DW Kennedy, AD Peacock, JP McKinley, CT Resch, JK Fredrickson, and A Konopka. 2012. "Distribution of microbial biomass and the potential for anaerobic respiration in Hanford Site 300 Area subsurface sediment." Applied and Environmental Microbiology 78(3):759-767. 
  • Lin X, JP McKinley, CT Resch, RM Kaluzny, C Lauber, JK Fredrickson, RC Knight, and A Konopka. 2012. "Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer." The ISME Journal 5:1665-1676.  doi:10.1038/ismej.2012.26
  • Liu J, Z Wang, SM Belchik, M Edwards, C Liu, DW Kennedy, ED Merkley, MS Lipton, JN Butt, D Richardson, JM Zachara, JK Fredrickson, KM Rosso, and L Shi. 2012. "Identification and Characterization of MtoA: a Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-oxidizing Bacterium Sideroxydans lithotrophicus ES-1." Frontiers in Microbiological Chemistry 3:Article No. 37.  doi:10.3389/fmicb.2012.00037
  • Marritt S, DG McMillan, L Shi, JK Fredrickson, JM Zachara, DJ Richardson, LJ Jeuken, and JN Butt. 2012. "The roles of CymA in support of the respiratory flexibility of Shewanella oneidensis MR-1." Biochemical Society: Transactions 40(6):1217-1221.  doi:10.1042/BST20120150
  • Marritt S, TG Lowe, J Bye, DG McMillan, L Shi, JK Fredrickson, JM Zachara, DJ Richardson, MR Cheesman, LJ Jeuken, and JN Butt. 2012. "A Functional Description of CymA, an Electron Transfer Hub Supporting Anaerobic Respiratory Flexibility in Shewanella." Biochemical Journal 444(3):465-474.  doi:10.1042/BJ20120197
  • Melnicki MR, GE Pinchuk, EA Hill, LA Kucek, JK Fredrickson, A Konopka, and AS Beliaev. 2012. "Sustained H2 Production Driven by Photosynthetic Water Splitting in a Unicellular Cyanobacterium." mBio 3(4):Article No. e00197-12.  doi:10.1128/mBio.00197-12
  • Nguyen HD, B Cao, B Mishra, MI Boyanov, KM Kemner, JK Fredrickson, and H Beyenal. 2012. "Microscale geochemical gradients in Hanford 300 Area sediment biofilms and influence of uranium." Water Research 46(1):227-234.  doi:10.1016/j.watres.2011.10.054
  • Pearce CI, MJ Wilkins, C Zhang, SM Heald, JK Fredrickson, and JM Zachara. 2012. "Pore-Scale Characterization of Biogeochemical Controls on Iron and Uranium Speciation under Flow Conditions." Environmental Science & Technology 46(15):7992-8000.  doi:10.1021/es301050h
  • Plymale AE, VL Bailey, JK Fredrickson, SM Heald, EC Buck, L Shi, Z Wang, CT Resch, DA Moore, and H Bolton, Jr. 2012. "Biotic and Abiotic Reduction and Solubilization of Pu(IV)O2xH2O(am) as Affected by Anthraquinone-2,6-disulfonate (AQDS) and Ethylenediaminetetraacetate (EDTA)." Environmental Science & Technology 46(4):2132-2140.  doi:10.1021/es2030752
  • Richardson D, JK Fredrickson, and JM Zachara. 2012. "Electron Transport at the Microbe-Mineral Interface: A Synthesis of Current Research Challenges." Biochemical Society: Transactions 40(6):1163-1166.  doi:10.1042/BST20120242
  • Richardson DJ, JN Butt, JK Fredrickson, JM Zachara, L Shi, MJ Edwards, GF White, N Baiden, AJ Gates, S Marritt, and TA Clarke. 2012. "The 'porin-cytochrome' model for microbe-to-mineral electron transfer." Molecular Microbiology 85(2):201-212.  doi:10.1111/j.1365-2958.2012.08088.x
  • Richardson DJ, M Edwards, GF White, N Baiden, RS Hartshorne, JK Fredrickson, L Shi, JM Zachara, AJ Gates, JN Butt, and T Clarke. 2012. "Exploring the biochemistry at the extracellular redox frontier of bacterial mineral Fe(III) respiration." Biochemical Society: Transactions 40(3):493-500. 
  • Shi L, KM Rosso, JM Zachara, and JK Fredrickson. 2012. "Mtr Extracellular Electron Transfer Pathways in Fe(III)-reducing or Fe(II)-oxidizing Bacteria: A Genomic Perspective." Biochemical Society: Transactions 40(6):1261-1267.  doi:10.1042/BST20120098
  • Shi L, KM Rosso, TA Clarke, DJ Richardson, JM Zachara, and JK Fredrickson. 2012. "Molecular Underpinnings of Fe(III) Oxide Reduction by Shewanella oneidensis MR-1." Frontiers in Microbiological Chemistry 3:Article No. 50.  doi:10.3389/fmicb.2012.00050
  • Shi Z, JM Zachara, L Shi, Z Wang, DA Moore, DW Kennedy, and JK Fredrickson. 2012. "Redox reactions of reduced flavin mononucleotide (FMN), riboflavin (RBF), and anthraquinone-2,6-disulfonate (AQDS) with ferrihydrite and lepidocrocite." Environmental Science & Technology 46(21):11644-11652.  doi:10.1021/es301544b
  • Stegen JC, X Lin, A Konopka, and JK Fredrickson. 2012. "Stochastic and Deterministic Assembly Processes in Subsurface Microbial Communities." The ISME Journal 6(9):1653-1664.  doi:10.1038/ismej.2012.22
  • Vu T, S Stolyar, GE Pinchuk, EA Hill, LA Kucek, RN Brown, MS Lipton, AL Osterman, JK Fredrickson, A Konopka, AS Beliaev, and JL Reed. 2012. "Genome-scale modeling of light-driven reductant partitioning and carbon fluxes in diazotrophic unicellular cyanobacterium Cyanothece sp. ATCC 51142." PLoS Computational Biology 8(4):e1002460.  doi:10.1371/journal.pcbi.1002460
  • Vu T, S Stolyar, GE Pinchuk, EA Hill, LA Kucek, RN Brown, MS Lipton, AL Osterman, JK Fredrickson, A Konopka, AS Beliaev, and JL Reed. 2012. "Genome-Scale Modeling of Light-Driven Reductant Partitioning and Carbon Fluxes in Diazotrophic Unicellular Cyanobacterium Cyanothece sp. ATCC 51142." PLoS Computational Biology 8(4):E1002460.  doi:10.1371/journal.pcbi.1002460
  • White GF, Z Shi, L Shi, A Dohnalkova, JK Fredrickson, JM Zachara, JN Butt, DJ Richardson, and T Clarke. 2012. "Development of a Proteoliposome Model to Probe Transmembrane Electron-Transfer Reactions." Biochemical Society: Transactions 40(6):1257-1260.  doi:10.1042/BST20120116

2011

  • Cao B, B Ahmed, DW Kennedy, Z Wang, L Shi, MJ Marshall, JK Fredrickson, NG Isern, PD Majors, and H Beyenal. 2011. "Contribution of Extracellular Polymeric Substances from Shewanella sp. HRCR-1 Biofilms to U(VI) Immobilization." Environmental Science & Technology 45(13):5483-5490.  doi:10.1021/es200095j
  • Zachara JM, BN Bjornstad, JN Christensen, MS Conrad, JK Fredrickson, MD Freshley, R Haggerty, GE Hammond, DB Kent, A Konopka, PC Lichtner, C Liu, JP McKinley, CJ Murray, ML Rockhold, Y Rubin, VR Vermeul, RJ Versteeg, AL Ward, and C Zheng. 2011. Multi-Scale Mass Transfer Processes Controlling Natural Attenuation and Engineered Remediation: An IFRC Focused on Hanford's 300 Area Uranium Plume January 2010 to January 2011PNNL-20257, Pacific Northwest National Laboratory, Richland, WA. 
  • Cao B, L Shi, RN Brown, Y Xiong, JK Fredrickson, MF Romine, MJ Marshall, MS Lipton, and H Beyenal. 2011. "Extracellular Polymeric Substances from Shewanella sp. HRCR-1 Biofilms: Characterization by Infrared Spectroscopy and Proteomics." Environmental Microbiology 13(4):1018-1031.  doi:10.1111/j.1462-2920.2010.02407.x
  • Belchik SM, DW Kennedy, A Dohnalkova, Y Wang, PC Sevinc, HJ Wu, Y Lin, HP Lu, JK Fredrickson, and L Shi. 2011. "Extracellular Reduction of Hexavalent Chromium by Cytochromes MtrC and OmcA of Shewanella oneidensis MR-1." Applied and Environmental Microbiology 77(12):4035-4041.  doi:10.1128/AEM.02463-10
  • Clarke TA, M Edwards, AJ Gates, A Hall, G White, J Bradley, CL Reardon, L Shi, AS Beliaev, MJ Marshall, Z Wang, N Watmough, JK Fredrickson, JM Zachara, JN Butt, and DJ Richardson. 2011. "Structure of a Bacterial Cell Surface Decaheme Electron Conduit." Proceedings of the National Academy of Sciences of the United States of America 108(23):9384-9389.  doi:10.1073/pnas.1017200108
  • Davidson M, B Silver, TC Onstott, DP Moser, TM Gihring, L Pratt, E Boice, BS Lollar, J Lippmann-Pipke, SM Pfiffner, TL Kieft, W Seymore, C Ralston, and JK Fredrickson. 2011. "Capture of Planktonic Microbial Diversity in Fractures by Long-Term Monitoring of Flowing Boreholes, Evander Basin, South Africa ." Geomicrobiology Journal 28(4):, doi:10.1080/01490451.2010.499928
  • Dohnalkova A, MJ Marshall, BW Arey, KH Williams, EC Buck, and JK Fredrickson. 2011. "Imaging Hydrated Microbial Extracellular Polymers: Comparative Analysis by Electron Microscopy ." Applied and Environmental Microbiology 77(4):1254-1262.  doi:10.1128/AEM.02001-10
  • Lee JH, DW Kennedy, A Dohnalkova, DA Moore, P Nachimuthu, SB Reed, and JK Fredrickson. 2011. "Manganese sulfide formation via concomitant microbial manganese oxide and thiosulfate reduction." Environmental Microbiology 13(12):3275-3288.  doi:10.1111/j.1462-2920.2011.02587.x
  • Lee JH, DW Kennedy, A Dohnalkova, DA Moore, P Nachimuthu, SB Reed, and JK Fredrickson. 2011. "Manganese sulfide formation via concomitant microbial manganese oxide and thiosulfate reduction." Environmental Microbiology 13(12):3275-3288.  doi:10.1111/j.1462-2920.2011.02587.x
  • Leyn S, X Li, Q Zheng, P Novichkov, SB Reed, MF Romine, JK Fredrickson, C Yang, AL Osterman, and DA Rodionov. 2011. "Control of Proteobacterial Central Carbon Metabolism by the HexR Transcriptional Regulator. A Case Study in Shewanella oneidensis." Journal of Biological Chemistry 286(41):35782-35794.  doi:10.1074/jbc.M111.267963
  • Lin X, DW Kennedy, JK Fredrickson, BN Bjornstad, and A Konopka. 2011. "Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site." Environmental Microbiology 14(2):414-425.  doi:10.1111/j.1462-2920.2011.02659.x
  • Pinchuk GE, OV Geydebrekht, EA Hill, JL Reed, A Konopka, AS Beliaev, and JK Fredrickson. 2011. "Pyruvate and Lactate Metabolism by Shewanella oneidensis MR-1 under Fermentation, Oxygen Limitation, and Fumarate Respiration Conditions." Applied and Environmental Microbiology 77(23):8234-8240.  doi:10.1128/AEM.05382-11
  • Pinchuk GE, OV Geydebrekht, EA Hill, JL Reed, A Konopka, AS Beliaev, and JK Fredrickson. 2011. "Pyruvate and Lactate Metabolism by Shewanella oneidensis MR-1 under Fermentation, Oxygen Limitation, and Fumarate Respiration Conditions." Applied and Environmental Microbiology 77(23):8234-8240.  doi:10.1128/AEM.05382-11
  • Plymale AE, JK Fredrickson, JM Zachara, A Dohnalkova, SM Heald, DA Moore, DW Kennedy, MJ Marshall, CM Wang, CT Resch, and P Nachimuthu. 2011. "Competitive Reduction of Pertechnetate (99TcO4-) by Dissimilatory Metal Reducing Bacteria and Biogenic Fe(II) ." Environmental Science & Technology 45(3):951-957. 
  • Rodionov DA, P Novichkov, ED Stavrovskaya, IA Rodionova, X Li, MD Kazanov, DA Ravcheev, AV Gerasimova, AE Kazakov, GY Kovaleva, EA Permina, ON Laikova, R Overbeek, MF Romine, JK Fredrickson, AP Arkin, I Dubchak, AL Osterman, and MS Gelfand. 2011. "Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus." BMC Genomics 12(Suppl 1):Article No. S3. 
  • Shi L, SM Belchik, Z Wang, DW Kennedy, A Dohnalkova, MJ Marshall, JM Zachara, and JK Fredrickson. 2011. "Identification and Characterization of UndA-HRCR-6, an Outer Membrane Endecaheme c-Type Cytochrome of Shewanella sp. Strain HRCR-6 ." Applied and Environmental Microbiology 77(15):5521-5523.  doi:10.1128/AEM.00614-11
  • Shi L, SM Belchik, AE Plymale, SM Heald, A Dohnalkova, K Sybirna, H Bottin, TC Squier, JM Zachara, and JK Fredrickson. 2011. "Purification and Characterization of [NiFe]-Hydrogenase of Shewanella oneidensis MR-1." Applied and Environmental Microbiology 77(16):5584-5590. 
  • Xiong Y, B Chen, L Shi, JK Fredrickson, DJ Bigelow, and TC Squier. 2011. "Targeted Protein Degradation of Outer Membrane Decaheme Cytochrome MtrC Metal Reductase in Shewanella oneidensis MR-1 Measured Using Biarsenical Probe CrAsH-EDT2." Biochemistry 50(45):9738-9751.  doi:10.1021/bi200602f
  • Zhang H, F Yang, W Qian, RN Brown, Y Wang, ED Merkley, JH Park, ME Monroe, SO Purvine, RJ Moore, L Shi, JK Fredrickson, L Pasa-Tolic, RD Smith, and MS Lipton. 2011. "Identification of c-Type Heme-Containing Peptides Using Non-Activated IMAC Resin Enrichment and Higher-Energy Collisional Dissociation." Analytical Chemistry 83(19):7260-7268.  doi:10.1021/ac2000829

2010

  • Zachara JM, BN Bjornstad, JN Christensen, ME Conrad, JK Fredrickson, MD Freshley, R Haggerty, G Hammon, DB Kent, A Konopka, PC Lichtner, C Liu, JP McKinley, CJ Murray, ML Rockhold, Y Rubin, VR Vermeul, RJ Versteeg, AL Ward, and C Zheng. 2010. Multi-Scale Mass Transfer Processes Controlling Natural Attenuation and Engineered Remediation: An IFRC Focused on Hanford's 300 Area Uranium PlumePNNL-19209, Pacific Northwest National Laboratory, Richland, WA. 
  • Bouhenni R, GJ Vora, JC Biffinger, S Shirodkar, KL Brockman, R Ray, P Wu, BJ Johnson, EM Biddle, MJ Marshall, LA Fitzgerald, B Little, JK Fredrickson, AS Beliaev, BR Ringeisen, and D Saffarini. 2010. "The role of Shewanella oneidensis MR-1 outer surface structures in extracellular electron transfer." Electroanalysis 22(7-8):856-864. 
  • Gao H, S Barua, Y Liang, L Wu, Y Dong, SB Reed, J Chen, DE Culley, DW Kennedy, Y Yang, Z He, KH Nealson, JK Fredrickson, JM Tiedje, MF Romine, and J Zhou. 2010. "Impacts of Shewanella oneidensis c-type cytochromes on aerobic and anaerobic respiration." Microbial Biotechnology 3(4):455-466.  doi:10.1111/j.1751-7915.2010.00181.x
  • Karpinets TV, A Obraztsova, Y Wang, DD Schmoyer, G Kora, BH Park, MH Serres, MF Romine, ML Land, TB Kothe, JK Fredrickson, KH Nealson, and E Uberbacher. 2010. "Conserved synteny at the protein family level reveals genes underlying Shewanella species cold tolerance and predicts their novel phenotypes." Functional & Integrative Genomics 10(1):97-110. 
  • Marshall MJ, AS Beliaev, and JK Fredrickson. 2010. "Microbiological Transformations of Radionuclides in the Subsurface." Chapter 4 in Environmental Microbiology, Second Edition, ed. R. Mitchell; J.-D. Gu, pp. 96-114.  Wiley-Blackwell, Hoboken, NJ. 
  • Peretyazhko T, JM Zachara, DW Kennedy, JK Fredrickson, BW Arey, JP McKinley, CM Wang, A Dohnalkova, and Y Xia. 2010. "Ferrous Phosphate Surface Precipitates Resulting from the Reduction of Intragrain 6-line Ferrihydrite by Shewanella oneidensis MR-1 ." Geochimica et Cosmochimica Acta 74(13):3751-3767.  doi:10.1016/j.gca.2010.04.008
  • Peretyazhko T, JM Zachara, DW Kennedy, JK Fredrickson, BW Arey, JP McKinley, CM Wang, A Dohnalkova, and Y Xia. 2010. "Ferrous phosphate surface precipitates resulting from the reduction of intragrain 6-line ferrihydrite by Shewanella oneidensis MR-1." Geochimica et Cosmochimica Acta 74(13):3751-3767.  doi:10.1016/j.gca.2010.04.008
  • Pinchuk GE, EA Hill, OV Geydebrekht, J De Ingeniis, X Zhang, A Osterman, JH Scott, SB Reed, MF Romine, A Konopka, AS Beliaev, JK Fredrickson, and JL Reed. 2010. "Constraint-Based Model of Shewanella oneidensis MR-1 Metabolism: a Tool for Data Analysis and Hypothesis Generation." PLoS Computational Biology 6(6):Art. No. e1000822.  doi:10.1371/journal.pcbi.1000822
  • Reardon CL, A Dohnalkova, P Nachimuthu, DW Kennedy, D Saffarini, BW Arey, L Shi, Z Wang, DA Moore, JS Mclean, DM Moyles, MJ Marshall, JM Zachara, JK Fredrickson, and AS Beliaev. 2010. "Role of Outer-Membrane Cytochromes MtrC and OmcA in the Biomineralization of Ferrihydrite by Shewanella oneidensis MR-1." Geobiology 8(1):56-68.  doi:10.1111/j.1472-4669.2009.00226.x
  • Renslow RS, PD Majors, JS McLean, JK Fredrickson, B Ahmed, and H Beyenal. 2010. "In Situ Effective Diffusion Coefficient Profiles in Live Biofilms Using Pulsed-Field Gradient Nuclear Magnetic Resonance." Biotechnology and Bioengineering 106(6):928-937. 
  • Rodionov DA, C Yang, X Li, IA Rodionova, Y Wang, A Obraztsova, OP Zagnitko, R Overbeek, MF Romine, SB Reed, JK Fredrickson, KH Nealson, and AL Osterman. 2010. "Genomic encyclopedia of sugar utilization pathways in the Shewanella genus ." BMC Genomics 11(494):, doi:10.1186/1471-2164-11-494
  • Turse JE, MJ Marshall, JK Fredrickson, MS Lipton, and SJ Callister. 2010. "An empirical strategy for characterizing bacterial proteomes across species in the absence of genomic sequences." PLoS One 5(11):Article No.: e13968.  doi:10.1371/journal.pone.0013968
  • Zhang H, RN Brown, W Qian, ME Monroe, SO Purvine, RJ Moore, MA Gritsenko, L Shi, MF Romine, JK Fredrickson, L Pasa-Tolic, RD Smith, and MS Lipton. 2010. "Quantitative analysis of cell surface membrane proteins using membrane-impermeable chemical probe coupled with 18O labeling." Journal of Proteome Research 9(5):2160-2169. 

2009

  • Charania M, K Brockman, Y Zhang, A Banerjee, G Pinchuk, JK Fredrickson, AS Beliaev, and D Saffarini. 2009. "Involvement of a Membrane-Bound Class III Adenylate Cyclase in Regulation of Anaerobic Respiration in Shewanella oneidensis MR-1 ." Journal of Bacteriology 191(13):4298-4306.  doi:10.1128/JB.01829-08
  • Charania M, KL Brockman, Y Zhang, A Banerjee, GE Pinchuk, JK Fredrickson, AS Beliaev, and D Saffarini. 2009. "Involvement of a Membrane-Bound Class III Adenylate Cyclase in Regulation of Anaerobic Respiration in Shewanella oneidensis MR-1." Journal of Bacteriology 191(13):4298-4306. 
  • Fredrickson JK, JM Zachara, AE Plymale, SM Heald, JP McKinley, DW Kennedy, C Liu, and P Nachimuthu. 2009. "Oxidative Dissolution Potential of Biogenic and Abiogenic TcO2 in Subsurface Sediments." Geochimica et Cosmochimica Acta 73(8):962-976.  doi:10.1016/j.gca.2009.01.027
  • Gao H, Z Yang, S Barua, SB Reed, MF Romine, KH Nealson, JK Fredrickson, JM Tiedje, and J Zhou. 2009. "Reduction of Nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA." The ISME Journal 3(8):966-976.  doi:10.1038/ismej.2009.40
  • Hartshorne RS, CL Reardon, DE Ross, J Nuester, TA Clarke, AJ Gates, PC Mills, JK Fredrickson, JM Zachara, L Shi, AS Beliaev, MJ Marshall, M Tien, SL Brantley, JN Butt, and D Richardson. 2009. "Characterization of an electron conduit between bacteria and the extracellular environment." Proceedings of the National Academy of Sciences of the United States of America 106(52):22169-22174.  doi:10.1073/pnas.0900086106
  • Jaisi DP, H Dong, AE Plymale, JK Fredrickson, JM Zachara, S Heald, and C Liu. 2009. "Reduction and long-term immobilization of technetium by Fe(II) associated with clay mineral nontronite ." Chemical Geology 264(1-4):127-138.  doi:10.1016/j.chemgeo.2009.02.018
  • Jiang S, JH Lee, MG Kim, NV Myung, JK Fredrickson, MJ Sadowsky, and HG Hur. 2009. "Biogenic formation of As-S nanotubes by diverse Shewanella strains ." Applied and Environmental Microbiology 75(21):6896-6899. 
  • Konstantinidis K, MH Serres, MF Romine, JLM Rodrigues, JM Auchutung, LA McCue, MS Lipton, A Obraztsova, CS Giometti, KH Nealson, JK Fredrickson, and JM Tiedje. 2009. "Comparative systems biology across an evolutionary gradient within the Shewanella genus ." Proceedings of the National Academy of Sciences of the United States of America 106(37):15909-15914.  doi:10.1073/pnas.0902000106
  • Liu C, JM Zachara, L Zhong, SM Heald, Z Wang, BH Jeon, and JK Fredrickson. 2009. "Microbial Reduction of Intragrain U(VI) in Contaminated Sediment." Environmental Science & Technology 43(13):4928-4933.  doi:10.1021/es8029208
  • Marshall MJ, A Dohnalkova, DW Kennedy, AE Plymale, SH Thomas, FE Loffler, R Sanford, JM Zachara, JK Fredrickson, and AS Beliaev. 2009. "Electron donor-dependent radionuclide reduction and nanoparticle formation by Anaeromyxobacter dehalogenans strain 2CP-C." Environmental Microbiology 11(2):534-543. 
  • Pinchuk GE, DA Rodionov, C Yang, X Li, AL Osterman, E Dervyn, OV Geydebrekht, SB Reed, MF Romine, FR Collart, J Scott, JK Fredrickson, and AS Beliaev. 2009. "Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals previously uncharacterized machinery for lactate utilization." Proceedings of the National Academy of Sciences of the United States of America 106(8):2874-2879. 
  • Shi L, D Richardson, Z Wang, SN Kerisit, KM Rosso, JM Zachara, and JK Fredrickson. 2009. "The Roles of Outer Membrane Cytochromes of Shewanella and Geobacter in Extracellular Electron Transfer." Environmental Microbiology Reports 1(4):220-227.  doi:10.1111/j.1758-2229.2009.00035.x

2008

  • Mclean JS, PD Majors, CL Reardon, CL Bilskis, SB Reed, MF Romine, and JK Fredrickson. 2008. "Investigations of Structure and Metabolism within Shewanella oneidensis MR-1 Biofilms ." Journal of Microbiological Methods 74(1):47-56. 
  • Wang Z, KB Wagnon, CC Ainsworth, C Liu, KM Rosso, and JK Fredrickson. 2008. "A Spectroscopic Study of the effect of Ligand Complexation on the Reduction of Uranium(VI) by Anthraquinone-2,6-disulfonate (AH2DS)." Radiochimica Acta 96(9-11):599-605.  doi:10.1524/ract.2008.1542
  • Mclean JS, GE Pinchuk, OV Geydebrekht, CL Bilskis, BA Zakrajsek, EA Hill, D Saffarini, MF Romine, YA Gorby, JK Fredrickson, and AS Beliaev. 2008. "Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1." Environmental Microbiology 10(7):1861-1876.  doi:10.1111/j.1462-2920.2008.01608.x
  • Clarke TA, T Holley, RS Hartshorne, JK Fredrickson, JM Zachara, L Shi, and D Richardson. 2008. "The role of multihaem cytochromes in the respiration of nitrite in Escherichia coli and Fe(III) in Shewanella oneidensis." Biochemical Society: Transactions 36(Pt. 5):1005-1010.  doi:10.1042/BST0361005
  • Elias DA, SL Tollaksen, DW Kennedy, HM Mottaz, CS Giometti, JS Mclean, EA Hill, GE Pinchuk, MS Lipton, JK Fredrickson, and YA Gorby. 2008. "The Influence of Cultivation Methods on Shewanella oneidensis Physiology and Proteome Expression ." Archives of Microbiology 189(4):313-324.  doi:10.1007/s00203-007-0321-y
  • Fredrickson JK, MF Romine, AS Beliaev, JM Auchutung, ME Driscoll, TS Gardner, KH Nealson, AL Osterman, GE Pinchuk, JL Reed, D Rodionov, JLM Rodrigues, D Saffarini, MH Serres, AM Spormann, IB Zhulin, and JM Tiedje. 2008. "Towards Environmental Systems Biology of Shewanella." Nature Reviews. Microbiology 6(8):592-603.  doi:10.1038/nrmicro1947
  • Fredrickson JK, SMW Li, E Gaidamakova, V Matrosova, M Zhai, HM Sulloway, JC Scholten, MG Brown,, DL Balkwill, and MJ Daly. 2008. "Protein Oxidation: Key to Bacterial Desiccation Resistance?" The ISME Journal 2(4):393-403.  doi:10.1038/ismej.2007.116
  • Fredrickson JK, and JM Zachara. 2008. "Electron Transfer at the Microbe-Mineral Interface: A Grand Challenge in Biogeochemistry." Geobiology 6(3):245-253. 
  • Marshall MJ, AE Plymale, DW Kennedy, L Shi, Z Wang, SB Reed, A Dohnalkova, CJ Simonson, C Liu, D Saffarini, MF Romine, JM Zachara, AS Beliaev, and JK Fredrickson. 2008. "Hydrogenase- and Outer Membrane c-Type Cytochrome-Facilitated Reduction of Technetium(VII) by Shewanella oneidensis MR-1." Environmental Microbiology 10(1):125-136.  doi:10.1111/j.1462-2920.2007.01438.x
  • Pinchuk GE, CG Ammons, DE Culley, SM Li, JS McLean, MF Romine, KH Nealson, JK Fredrickson, and AS Beliaev. 2008. "Utilization of DNA as a Sole Source of Phosphorus, Carbon, and Energy by Shewanella spp.: Ecological and Physiological Implications for Dissimilatory Metal Reduction." Applied and Environmental Microbiology 74(4):1198-1208.  doi:10.1128/AEM.02026-07
  • Shi L, S Deng, MJ Marshall, Z Wang, DW Kennedy, A Dohnalkova, HM Mottaz, EA Hill, YA Gorby, AS Beliaev, DJ Richardson, JM Zachara, and JK Fredrickson. 2008. " Direct Involvement of Type II Secretion System in Extracellular Translocation of Shewanella Oneidensis Outer Membrane Cytochromes MtrC and OmcA." Journal of Bacteriology 190(15):5512-5516.  doi:10.1128/JB.00514-08
  • Wang Z, C Liu, X Wang, MJ Marshall, JM Zachara, KM Rosso, M Dupuis, JK Fredrickson, SM Heald, and L Shi. 2008. "Kinetics of Reduction of Fe(III) Complexes by Outer Membrane Cytochromes MtrC and OmcA of Shewanella oneidensis MR-1." Applied and Environmental Microbiology 74(21):6746-6755.  doi:10.1128/AEM.01454-08
  • Zhang H, X Tang, GR Munske, NL Zakharova, L Yang, C Zheng, MA Wolff, N Tolic, GA Anderson, L Shi, MJ Marshall, JK Fredrickson, and JE Bruce. 2008. "In Vivo Identification of the Outer Membrane Protein OmcA-MtrC Interaction Network in Shewanella oneidensis MR-1 Cells Using Novel Hydrophobic Chemical Cross-Linkers." Journal of Proteome Research 7(4):1712-1720.  doi:10.1021/pr7007658

2007

  • Zachara JM, JK Fredrickson, RK Kukkadapu, and YA Gorby. 2007. "Anaerobic Microbial-Mineral Processes with Fe(III) Oxides: Experimental Considerations and Approaches." Chapter 4 in Methods for Investigating Microbial-Mineral Interactions: CMS Workshop Lectures, vol. 14, ed. Patricia A. Maurice and Leslie A. Warren, pp. 117-165.  The Clay Minerals Society, West Lafayette, IN. 
  • Biju VP, D Pan, YA Gorby, JK Fredrickson, JS Mclean, D Saffarini, and HP Lu. 2007. "Combined Spectroscopic and Topographic Characterization of Nanoscale Domains and Their Distributions of a Redox Protein on Bacterial Cell Surfaces ." Langmuir 23(3):1333-1338.  doi:10.1021/la061343z
  • Bretschger O, A Obraztsova, CA Sturm, IS Chang, YA Gorby, SB Reed, DE Culley, CL Reardon, S Barua, MF Romine, J Zhou, AS Beliaev, R Bouhenni, D Saffarini, F Mansfeld, BH Kim, JK Fredrickson, and KH Nealson. 2007. "Current Production and Metal Oxide Reduction by Shewanella Oneidensis MR-1 Wild Type and Mutants." Applied and Environmental Microbiology 73(21):7003-7012.  doi:10.1128/AEM.01087-07
  • Daly MJ, E Gaidamakova, V Matrosova, A Vasilenko, M Zhai, RD leapman, B Lai, B Ravel, SMW Li, KM Kemner, and JK Fredrickson. 2007. "Protein Oxidation Implicated as the Primary Determinant of Bacterial Radioresistance." PLoS Biology 5(4):e92.  doi:10.1371/journal.pbio.0050092
  • Deflaun MF, JK Fredrickson, H Dong, SM Pfiffner, TC Onstott, DL Balkwill, SH Streger, E Stackebrandt, S Knoessen, and E van Heerden. 2007. "Isolation and Characterization of a Geobacillus thermoleovorans Strain from an Ultra-Deep South African Gold Mine." Systematic and Applied Microbiology 30(2):152-164. 
  • Driscoll ME, MF Romine, FS Juhn, MH Serres, LA McCue, AS Beliaev, JK Fredrickson, and TS Gardner. 2007. "Identification of diverse carbon utilization pathways in Shewanella oneidensis MR-1 via expression profiling." Genome Informatics 18:287-298. 
  • Hartshorne RS, BN Jepson, TA Clarke, SJ Field, JK Fredrickson, JM Zachara, L Shi, JN Butt, and D Richardson. 2007. "Characterization of Shewanella oneidensis MtrC: a cell-surface decaheme cytochrome involved in respiratory electron transport to extracellular electron acceptors." Journal of Biological Inorganic Chemistry 12(7):1083-1094.  doi:10.1007/s00775-007-0278-y
  • Lee JH, MG Kim, B Yoo, NV Myung, J Maeng, T Lee, A Dohnalkova, JK Fredrickson, MJ Sadowsky, and HG Hur. 2007. "Biogenic formation of photoactive arsenic-sulfide nanotubes by Shewanella sp. strain HN-41 ." Proceedings of the National Academy of Sciences of the United States of America 104(51):20410-20415.  doi:10.1073/pnas.0707595104
  • Lee JH, MG Kim, B Yoo, NV Myung, J Maeng, T Lee, A Dohnalkova, JK Fredrickson, MJ Sadowsky, and HG Hur. 2007. "Biogenic Production of Photosensitive Arsenic-Sulfide Nanotubes by Shwanella sp. strain HN-41." Proceedings of the National Academy of Sciences of the United States of America 104(51):20410-20415. 
  • Makarova KS, MV Omelchenko, E Gaidamakova, V Matrosova, A Vasilenko, M Zhai, A Lapidus, A Copeland, E Kim, M Land, K Mavromatis, S Pitluck, PM Richardson, JC Detter, T Brettin, E Saunders, B Lai, B Ravel, KM Kemmer, YI Wolf, A Sorokin, AV Gerasimova, MS Gelfand, JK Fredrickson, EV Koonin, and MJ Daly. 2007. "Deinococcus geothermalis: The Pool of Extreme Radiation Resistance Genes Shrinks." PLoS One 2(9):Article no. e955. 
  • Shi L, TC Squier, JM Zachara, and JK Fredrickson. 2007. "Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromes." Molecular Microbiology 65(1):12-20.  doi:10.1111/j.1365-2958.2007.05783.x

2006

  • Felmy AR, DR Baer, JK Fredrickson, RE Gephart, and KM Rosso. 2006. The Development of New User Research Capabilities in Environmental Molecular Science: Workshop Report PNNL-16054, Pacific Northwest National Laboratory, Richland, WA. 
  • Brim H, JP Osborne, HM Kostandarithis, JK Fredrickson, LP Wackett, and MJ Daly. 2006. "Deinococcus radiodurans Engineered for Complete Toluene Degradation Facilitates Cr(VI) Reduction." Microbiology 152(8):2469-2477. 
  • Elias DA, ME Monroe, RD Smith, JK Fredrickson, and MS Lipton. 2006. "Confirmation of the Expression of a Large Set of Conserved Hypothetical Proteins in Shewanella oneidensis MR-1." Journal of Microbiological Methods 66(2):223-233. 
  • Fang R, DA Elias, ME Monroe, Y Shen, M McIntosh, P Wang, CD Goddard, SJ Callister, RJ Moore, YA Gorby, JN Adkins, JK Fredrickson, MS Lipton, and RD Smith. 2006. "Differential Label-free Quantitative Proteomic Analysis of Shewanella oneidensis Cultured under Aerobic and Suboxic Conditions by Accurate Mass and Time Tag Approach." Molecular & Cellular Proteomics. MCP 5(4):714-725.  doi:10.1074/mcp.M500301-MCP200
  • Gao H, A Obraztova, N Stewart, R Popa, JK Fredrickson, JM Tiedje, K Nealson, and J Zhou. 2006. "Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean ." International Journal of Systematic and Evolutionary Microbiology 56(8):1911-1916. 
  • Gorby YA, S Yanina, JS Mclean, KM Rosso, DM Moyles, A Dohnalkova, TJ Beveridge, IS Chang, BH Kim, KS Kim, DE Culley, SB Reed, MF Romine, D Saffarini, EA Hill, L Shi, DA Elias, DW Kennedy, GE Pinchuk, K Watanabe, S Ishii, B Logan, KH Nealson, and JK Fredrickson. 2006. "Electrically Conductive Bacterial Nanowires Produced by Shewanella Oneidensis Strain MR-1 and Other Microorganisms ." Proceedings of the National Academy of Sciences of the United States of America 103(30):11358-11363. 
  • Harvey SD, GM Mong, RM Ozanich, JS Mclean, SM Goodwin, NB Valentine, and JK Fredrickson. 2006. "Preparation and evaluation of spore-specific affinity- augmented bio-imprinted beads." Analytical and Bioanalytical Chemistry 386(2):211-219.  doi:10.1007/s00216-006-0622-z
  • Kovacik WP, Jr, K Takai, MR Mormile, JP McKinley, FJ Brockman, JK Fredrickson, and WE Holben. 2006. "Molecular analysis of deep subsurface Cretaceous rock indicates abundant Fe(III)- and S-reducing bacteria in a sulfate-rich environment." Environmental Microbiology 8(1):141-155.  doi:10.1111/j.1462-2920.2005.00876.x
  • Kukkadapu RK, JM Zachara, JK Fredrickson, JP McKinley, DW Kennedy, SC Smith, and H Dong. 2006. "Reductive Biotransformation of Fe in Shale-Limestone Saprolite Containing Fe(III) Oxides and Fe(II)/Fe(III) Phyllosilicates." Geochimica et Cosmochimica Acta 70(14):3662-3676.  doi:10.1016/j.gca.2006.05.004
  • Lipton MS, MF Romine, ME Monroe, DA Elias, L Pasa-Tolic, GA Anderson, DJ Anderson, JK Fredrickson, KK Hixson, CD Masselon, HM Mottaz, N Tolic, and RD Smith. 2006. "AMT Tag Approach to Proteomic Characterization of Deinococcus Radiodurans and Shewanella Oneidensis ." In Microbial Proteomics, Methods of Biochemical Analysis, vol. 49, ed. I. Humphery-Smith and M. Hecker, pp. 113-134.  John Wiley & Sons, Inc., Hoboken, NJ. 
  • Liu C, BH Jeon, JM Zachara, Z Wang, A Dohnalkova, and JK Fredrickson. 2006. "Kinetics of Microbial Reduction of Solid Phase U(VI)." Environmental Science and Technology 40(20):6290-6296. 
  • Marshall MJ, AS Beliaev, A Dohnalkova, DW Kennedy, L Shi, Z Wang, MI Boyanov, B Lai, KM Kemner, JS Mclean, SB Reed, DE Culley, VL Bailey, CJ Simonson, D Saffarini, MF Romine, JM Zachara, and JK Fredrickson. 2006. "c-Type Cytochrome-Dependent Formation of U(IV) Nanoparticles by Shewanella oneidensis ." PloS Biology 4(8):1324-1333. 
  • Roh Y, H Gao, H Vali, DW Kennedy, Z Yang, W Gao, A Dohnalkova, RD Stapleton, JW Moon, TJ Phelps, JK Fredrickson, and J Zhou. 2006. "Metal Reduction and Iron Biomineralization by a Psychrotolerant Fe(III)-Reducing Bacterium, Shewanella sp. Strain PV-4." Applied and Environmental Microbiology 72(5):3236-3244. 
  • Roh Y, H Gao, H Vali, DW Kennedy, Z Yang, W Gao, A Dohnalkova, RD Stapleton, JW Moon, TJ Phelps, JK Fredrickson, and J Zhou. 2006. "Metal Reduction and Iron Biomineralization by a Psychrotolerant Fe(III)-Reducing Bacterium, Shewanella sp. Strain PV-4." Applied and Environmental Microbiology 72(5):3236-3244.  doi:10.1128/AEM.72.5.3236-3244.2006
  • Shi L, B Chen, Z Wang, DA Elias, MU Mayer, YA Gorby, S Ni, BH Lower, DW Kennedy, DS Wunschel, HM Mottaz, MJ Marshall, EA Hill, AS Beliaev, JM Zachara, JK Fredrickson, and TC Squier. 2006. "Isolation of a High-Affinity Functional Protein Complex between OmcA and MtrC: Two Outer Membrane Decaheme c-type Cytochromes of Shewanella oneidensis MR-1 ." Journal of Bacteriology 188(13):4705-4714.  doi:10.1128/JB.01966-05
  • Xiong Y, L Shi, B Chen, MU Mayer, BH Lower, londer, S Bose, MF Hochella, JM Zachara, JK Fredrickson, and TC Squier. 2006. "High-Affinity Binding and Direct Electron Transfer to Solid Metals by the Shewanella oneidensis MR-1 Outer Membrane c-type Cytochrome OmcA." Journal of the American Chemical Society 128(43):13978-13979.  doi:10.1021/ja063526d

2005

  • Fredrickson JK, and DL Balkwill. 2005. "Geomicrobial Processes and Biodiversity in the Deep Terrestrial Subsurface." Geomicrobiology Journal 23(6):345 - 356 .  doi:10.1080/01490450600875571
  • Fredrickson JK. 2005. "Between a Rock and a Hard Place: Geomicrobial Electron Transfer." Environmental Microbiology 7:475-476. 
  • McKinley JP, JK Fredrickson, and FS Colwell. 2005. "Groundwater Microbial Communities, Part 9: Ecological and Hydrological Interactions." Chapter 106 in Encyclopedia of Hydrological Sciences, ed. M.G. Anderson.  John Wiley and Sons, Chichester, United Kingdom. 
  • Beliaev AS, DM Klingeman, J Klappenbach, L Wu, MF Romine, JM Tiedje, KH Nealson, JK Fredrickson, and J Zhou. 2005. "Global Transcriptome Analysis of Shewanella oneidensis MR-1 Exposed to Different Terminal Electron Acceptors." Journal of Bacteriology 187(20):7138-7145.  doi:10.1128/JB.187.20.7138-7145.2005
  • Dichristina TJ, JK Fredrickson, and JM Zachara. 2005. "Enzymology of Electron Transport: Energy Generation with Geochemical Consequences." Chapter 3 in Molecular Geomicrobiology, Reviews in Mineralogy & Geochemistry, vol. 59, ed. J.F. Banfield, J. Cervini-Silva and K.H. Nealson, pp. 27-52.  Mineralogical Society of America, Chantilly, VA. 
  • Elias DA, ME Monroe, MJ Marshall, MF Romine, AS Beliaev, JK Fredrickson, GA Anderson, RD Smith, and MS Lipton. 2005. "Global detection and characterization of hypothetical proteins in Shewanella oneidensis MR-1 using LC-MS based proteomics based proteomics." Proteomics 5(12):3120-3130.  doi:10.1002/pmic.200401140
  • Fredrickson JK, and MF Romine. 2005. "Genome-Assisted Analysis of Dissimilatory Metal-Reducing Bacteria." Current Opinion in Biotechnology 16(3):269-274. 
  • Ghosal D, MV Omelchenko, E Gaidamakova, V Matrosova, A Vasilenko, A Venkateswaran, M Zhai, HM Kostandarithes, H Brim, KS Makarova, LP Wackett, JK Fredrickson, and MJ Daly. 2005. "How radiation kills cells: Survival of Deinococcus radiodurans and Shewanella oneidensis under oxidative stress." FEMS Microbiology Reviews 29(2):361-375. 
  • Kelly SD, KM Kemner, SC Brooks, JK Fredrickson, SL Carroll, DW Kennedy, JM Zachara, AE Plymale, and S Fendorf. 2005. "Ca-UO2-CO3 Complexation - Implications for Bioremediation of U(VI)." Physica Scripta T115:915-917.  doi:10.1238/Physica.Topical.115a00915
  • Kolker E, AF Picone, MY Galperin, MF Romine, R Higdon, KS Makarova, N Kolker, GA Anderson, X Qiu, KJ Auberry, G Babnigg, AS Beliaev, P Edlefsen, DA Elias, YA Gorby, T Holzman, J Klappenbach, K Konstantinidis, ML Land, MS Lipton, LA McCue, ME Monroe, L Pasa-Tolic, GE Pinchuk, SO Purvine, M Serres, S Tsapin, BA Zakrajsek, W Zhu, J Zhou, F Larimer, C Lawrence, M Riley, FR Collart, JR Yates, III, RD Smith, CS Giometti, K Nealson, JK Fredrickson, and JM Tiedje. 2005. "Global Profiling of Shewanella oneidensis MR-1: Expression of Hypothetical Genes and Improved functional annotations." Proceedings of the National Academy of Sciences of the United States of America 102(6):2099-2104. 
  • Kukkadapu RK, JM Zachara, JK Fredrickson, DW Kennedy, A Dohnalkova, and DE McCready. 2005. "Ferrous Hydroxy Carbonate is a Stable Transformation Product of Biogenic Magnetite." American Mineralogist 90(2-3):510-515. 
  • Majors PD, JS Mclean, GE Pinchuk, JK Fredrickson, YA Gorby, KR Minard, and RA Wind. 2005. "NMR methods for in-situ biofilm metabolism studies." Journal of Microbiological Methods 62(3):337-344. 
  • Majors PD, JS Mclean, JK Fredrickson, and RA Wind. 2005. "NMR methods for in-situ biofilm metabolism studies: spatial and temporal resolved measurements." Water Science and Technology 52(7):7-12. 
  • Moser DP, TM Gihring, FJ Brockman, JK Fredrickson, DL Balkwill, ME Dollhopf, BS Lollar, L Pratt, E Boice, G Southam, G Wanger, B Baker, S Pfiffner, L Lin, and TC Onstott. 2005. " Desulfotomaculum spp.and Methanobacterium spp. Dominate a 4-5 km Deep Fault." Applied and Environmental Microbiology 71(12):8773-8783. 

2004

  • Zachara JM, RK Kukkadapu, PL Gassman, A Dohnalkova, JK Fredrickson, and T Anderson. 2004. "Biogeochemical Transformation of Fe Minerals in a Petroleum-Contaminated Aquifer." Geochimica et Cosmochimica Acta 68(8):1791-1805. 
  • Balkwill DL, TL Kieft, T Tsukuda, HM Kostandarithes, TC Onstott, S Macnaughton, J Bownas, and JK Fredrickson. 2004. "Identification of Iron-reducing Thermus strains as Thermus scotoductus." Extremophiles 8(1):37-44. 
  • Daly MJ, E Gaidamakova, V Matrosova, A Vasilenko, M Zhai, A Venkateswaran, M Hess, MV Omelchenko, HM Kostandarithes, S Makarova, LP Wackett, JK Fredrickson, and D Ghosal. 2004. "Accumulation of Mn(II) in Deinococcus radiodurans Facilitates Gamma-Radiation Resistance." Science 306(5698):1025-1028. 
  • Fredrickson JK, JM Zachara, DL Balkwill, DW Kennedy, SMW Li, HM Kostandarithes, MJ Daly, MF Romine, and FJ Brockman. 2004. "Geomicrobiology of High Level Nuclear Waste-Contaminated Vadose Sediments at the Hanford Site, Washington State." Applied and Environmental Microbiology 70(7):4230-4241. 
  • Fredrickson JK, JM Zachara, DW Kennedy, RK Kukkadapu, JP McKinley, SM Heald, C Liu, and AE Plymale. 2004. "Reduction of TcO4- by sediment-associated biogenic Fe(II)." Geochimica et Cosmochimica Acta 68(15):3171-3187. 
  • Hu JZ, RA Wind, JS Mclean, YA Gorby, CT Resch, and JK Fredrickson. 2004. "High Resolution 1H NMR Spectroscopy of Metabolically Active Microorganisms Using Non-Destructive Magic Angle Spinning." Spectroscopy 19(12):98-103. 
  • Kukkadapu RK, JM Zachara, JK Fredrickson, and DW Kennedy. 2004. "Biotransformation of Two-Line Silica-Ferrihydrite by a Dissimilatory Fe(III)-Reducing Bacterium: Formation of Carbonate Green Rust in the Presence of Phosphate." Geochimica et Cosmochimica Acta 68(13):2799-2814. 
  • Lehman RM, SP O'Connell, A Banta, JK Fredrickson, AL Reysenbach, TL Kieft, and FS Colwell. 2004. "Microbiological Comparison of Core and Groundwater Samples Collected from a Fractured Basalt Aquifier with that of Dialysis Chamber Incubated in Situ." Geomicrobiology Journal 21(3):169-182. 
  • Romine MF, DA Elias, ME Monroe, KJ Auberry, R Fang, JK Fredrickson, GA Anderson, RD Smith, and MS Lipton. 2004. "Validation of Shewanella oneidensis MR-1 Small Proteins by AMT Tag-based Proteome Analysis." OMICS. A Journal of Integrative Biology 8(3):239-254. 
  • Rosso KM, DMA Smith, Z Wang, CC Ainsworth, and JK Fredrickson. 2004. "Self-Exchange Electron Transfer Kinetics and Reduction Potentials for Anthraquinone Disulfonate." Journal of Physical Chemistry A 108(16):3292-3303. 

2003

  • Fredrickson JK. 2003. "Subsurface Microorganisms: Ecological significance." In Encyclopedia of Environmental Microbiology.  John Wiley & Sons, Inc., New York. 
  • Baker BJ, DP Moser, BJ MacGregor, S Fishbain, M Wagner, NK Fry, B Jackson, N Speolstra, S Loos, K Takai, BS Lollar, JK Fredrickson, DL Balkwill, TC Onstott, CF Wimpee, and DA Stahl. 2003. "Related Assemblages of Sulphate-reducing Bacteria Associated with Ultradeep Gold Mines of South Africa and Deep Basalt Aquifers of Washington State." Environmental Microbiology 5(4):267-277. 
  • Balkwill DL, JK Fredrickson, and MF Romine. 2003. "Sphingomonas and Related Genera." In The Prokaryotes: An Evolving Electronic Resource for the Microbiological Community, 3rd ed. Release 3.14, ed. M. Dworkin.  Springer-Verlag, New York, NY. 
  • Brim H, A Venkateswaran, HM Kostandarithes, JK Fredrickson, and MJ Daly. 2003. "Engineering Deinococcus geothermailis for Bioremediation of High-Temperature Radioactive Waste Environments." Applied and Environmental Microbiology 69(8):4575-4582. 
  • Brooks SC, JK Fredrickson, SL Carroll, DW Kennedy, JM Zachara, AE Plymale, SD Kelly, KM Kemner, and S Fendorf. 2003. "Inhibition of bacterial U(VI) reduction by calcium." Environmental Science and Technology 37(9):1850-1858. 
  • Dong H, RK Kukkadapu, JK Fredrickson, JM Zachara, DW Kennedy, and HM Kostandarithes. 2003. "Microbial Reduction of Structural Fe(III) in Illite and Goethite." Environmental Science and Technology Vol. 37(7):1268-1276 . 
  • Fredrickson JK, S Kota, RK Kukkadapu, C Liu, and JM Zachara. 2003. "Influence of Electron Donor/Acceptor Concentrations on Hydrous Ferric Oxide (HFO) Bioreduction." Biodegradation 14(2):91-103. 
  • Kukkadapu RK, JM Zachara, JK Fredrickson, SC Smith, A Dohnalkova, and CK Russell. 2003. "Transformation of 2-line Ferrihydrite to 6-line Ferrihydrite under Oxic and Anoxic Conditions." American Mineralogist 88(11-12):1903-1914 pt. 2. 
  • Mormile MR, MA Biesen, MC Gutierrez, A Ventosa, JB Pavlovich, TC Onstott, and JK Fredrickson. 2003. "Isolation of Halobacterium salinarum retrieved directly from halite brine inclusions." Environmental Microbiology 5(11):1094-1102. 
  • Moser DP, JK Fredrickson, DR Geist, EV Arntzen, AD Peacock, SMW Li, CM Spadoni, and JP McKinley. 2003. "Biogeochemical Processes and Microbial Characteristics Across Groundwater - Surface Water Boundaries of the Hanford Reach of the Columbia River." Environmental Science and Technology 37(22):5127-5134. 
  • Moser DP, TC Onstott, JK Fredrickson, FJ Brockman, DL Balkwill, GR Drake, S Pfiffner, DC White, K Takai, LM Pratt, J Fong, BS Lollar, G Slater, TJ Phelps, N Spoelstra, M Deflaun, G Southam, AT Welty, BJ Baker, and J Hoek. 2003. "Temporal Shifts in the Geochemistry and Microbial Community Structure of an Ultradeep Mine Borehole Following Isolation." Geomicrobiology Journal 20(6):517-548. 
  • Onstott TC, DP Moser, S Pfiffner, JK Fredrickson, FJ Brockman, TJ Phelps, DC White, AD Peacock, DL Balkwill, R Hoover, L Krumholz, M Borscik, TL Kieft, and R Wilson. 2003. "Indigenous and Contaminant Microbes in Ultradeep Mines." Environmental Microbiology 5(11):1168-1191. 
  • Onstott TC, DP Moser, SM Pfiffner, JK Fredrickson, FJ Brockman, TJ Phelps, DC White, AD Peacock, DL Balkwill, R Hoover, L Krumholz, M Borscik, T Kieft, and R Wilson. 2003. "Indigenous and contaminant microbes in ultradeep mines ." Environmental Microbiology 5(11):1168-1191.  doi:10.1046/j.1462-2920.2003.00512.x
  • Rosso KM, JM Zachara, JK Fredrickson, YA Gorby, and SC Smith. 2003. "Nonlocal Bacterial Electron Transfer to Hematite Surfaces." Geochimica et Cosmochimica Acta 67(5):1081-1087. 
  • Takai K, MR Mormile, JP Mckinley, FJ Brockman, WE Holben, WP Kovacik, and JK Fredrickson. 2003. "Shifts in Archaeal Communities Associated with Lithological and Geochemical Variations in Subsurface Cretaceous Rock." Environmental Microbiology 5(4):309-320.  doi:10.1046/j.1462-2920.2003.0421x

2002

  • Zachara JM, RK Kukkadapu, JK Fredrickson, YA Gorby, and SC Smith. 2002. "Biomineralization of Poorly Crystalline Fe(III) Oxides by Dissimilatory Metal Reducing Bacteria (DMRB)." Geomicrobiology Journal 19:179-207. 
  • Fredrickson JK, JM Zachara, DW Kennedy, C Liu, MC Duff, D Hunter, and A Dohnalkova. 2002. "Influence of Mn oxides on the reduction of U(VI) by the metal-reducing bacterium Shewanella putrefaciens." Geochimica et Cosmochimica Acta 66(18):3247-3262. 
  • Lipton MS, L Pasa-Tolic, GA Anderson, DJ Anderson, DL Auberry, JR Battista, MJ Daly, JK Fredrickson, KK Hixson, HM Kostandarithes, CD Masselon, LM Markillie, RJ Moore, MF Romine, Y Shen, EF Strittmatter, N Tolic, HR Udseth, A Venkateswaran, KK Wong, R Zhao, and RD Smith. 2002. "Global Analysis of Deinococcus Radiodurans Proteome by Csing Accurate Mass Tags." Proceedings of the National Academy of Sciences of the United States of America 99(17):11049-11054. 
  • Liu C, JM Zachara, JK Fredrickson, DW Kennedy, and A Dohnalkova. 2002. "Modeling the Inhibition of the Bacterial Reduction of U(VI) by beta-MnO2(S)(g)." Environmental Science and Technology 36(7):1452-1459. 
  • Liu C, YA Gorby, JM Zachara, JK Fredrickson, and CF Brown. 2002. "Reduction Kinetics of Fe(III), Co(III), U(VI), Cr(VI), and Tc(VII) in Cultures of Dissimilatory Metal-reducing Bacteria." Biotechnology and Bioenegineering 80(6):637-649. 
  • Phelps TJ, and JK Fredrickson. 2002. "Drilling, Coring, and Sampling Subsurface Ennvironments." Chapter 64 in Manual of Environmental Microbiology, 2nd Edition, ed. CJ Hurst, RL Crawford, GR Knudsen et al, pp. 679-695.  ASM Press, Washington, DC. 
  • Rai D, YA Gorby, JK Fredrickson, DA Moore, and M Yui. 2002. "Reductive Dissolution of PuO2(am): The Effect of Fe(II) and Hydroquinone." Journal of Solution Chemistry 31(6):433-453. 

2001

  • Fredrickson JK, and M Fletcher. 2001. Subsurface Microbiology and Biogeochemistry.  Wiley-Liss, New York, NY. 
  • Fredrickson JK, and M Fletcher. 2001. "Biogeochemical and geological significance of subsurface microbiology." In Subsurface Microbiology and Biogeochemistry, pp. 3-37.  Wiley-LISS, Inc., New York, NY. 
  • Zachara JM, JK Fredrickson, SC Smith, and PL Gassman. 2001. "Solubilization of Fe(III) Oxide-Bound Trace Metals by a Dissimilatory Fe(III) Reducing Bacterium." Geochimica et Cosmochimica Acta 65(1):75-93. 
  • Balkwill D, J Chen, M Deflaun, F Dobbs, H Dong, JK Fredrickson, M Fuller, M Green, T Ginn, T Griffin, W Holben, S Hubbard, W Johnson, PE Long, B Mailloux, E Majer, M Mcinerney, CJ Murray, T Onstott, T Phelps, TD Scheibe, D Swift, D White, and F Wobber. 2001. "Breakthroughs in field-scale bacterial transport." Eos 82(38):417, 423-425. 
  • Dohnalkova A, YA Gorby, JS Mclean, JK Fredrickson, and DA Kennedy. 2001. "Biogenic Mineral Formation by Iron Reducing Bacteria ." In Proceedings of the 59th Annual Meeting of the Microscopy Society of America, Microscopy and Microanalysis, Vol 7, supp 2, pp. 756-757.  Microscopy Society of America, Reston, VA. 
  • Fredrickson JK, JM Zachara, RK Kukkadapu, YA Gorby, SC Smith, and CF Brown. 2001. "Biotransformation of Ni-Substituted Hydrous Ferric Oxide by an Fe(III)-Reducing Bacterium." Environmental Science and Technology 35(4):703-712. 
  • Kukkadapu RK, JM Zachara, SC Smith, JK Fredrickson, and C Liu. 2001. "Dissimilatory Bacterial Reduction of Al-Substituted Goethite in Subsurface Sediments." Geochimica et Cosmochimica Acta 65(17):2913-2924. 
  • Liu C, S Kota, JM Zachara, JK Fredrickson, and CK Brinkman. 2001. "Kinetic Analysis of the Bacterial Reduction of Goethite." Environmental Science and Technology 35:2482-2490. 
  • Shi T, JK Fredrickson, and DL Balkwill. 2001. "Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas strains isolated from the terrestrial subsurface." Journal of Industrial Microbiology and Biotechnology 26(5):283-289. 
  • Takai K, DP Moser, M Deflaun, TC Onstott, and JK Fredrickson. 2001. "Archaeal Diversity in Waters from Deep South African Gold Mines." Applied and Environmental Microbiology 67(12):5750-5760. 
  • Takai K, DP Moser, TC Onstott, N Spoelstra, SM Pfiffner, A Dohnalkova, and JK Fredrickson. 2001. "Alkaliphilus transvaalensis gen. nov., sp. nov., an extremely alkaliphilic bacterium isolated from a deep South African gold mine." International Journal of Systematic and Evolutionary Microbiology 51(part 4):1245-1256. 

2000

  • Wildung RE, YA Gorby, KM Krupka, NJ Hess, SMW Li, AE Plymale, JP McKinley, and JK Fredrickson. 2000. "Effect of Electron Donor and Solution Chemistry on the Products of Dissimilatory Reduction of Technetium by Shewanella putrefaciens." Applied and Environmental Microbiology 66(6):2451-2460. 
  • Zachara JM, SC Smith, and JK Fredrickson. 2000. "The Effect of Biogenic Fe(II) on the Stability and Sorption of Co(II)EDTA2- to Goethite and a Subsurface Sediment." Geochimica et Cosmochimica Acta 64(8):1345-1362. 
  • Brim HS, SC Mcfarlan, JK Fredrickson, KW Minton, M Zhai, LP Wackett, and M Daly. 2000. "Engineering deinococcus radiodurans for metal remediation in radioactive mixed waste environments." Nature Biotechnology 18:85-90. 
  • Dong H, JK Fredrickson, DW Kennedy, JM Zachara, RK Kukkadapu, and TC Onstott. 2000. "Mineral Transformations Associated with the Microbial Reduction of Magnetite." Chemical Geology 169:299-318. 
  • Fredrickson JK, JM Zachara, DW Kennedy, YA Gorby, SMW Li, and KM Krupka. 2000. "Reduction of U(VI) in Goethite (a-FeOOH) Suspensions by a Dissimilatory Metal-Reducing Bacterium." Geochimica et Cosmochimica Acta 64:3085-3098. 
  • Fredrickson JK, HM Kostandarithes, SMW Li, AE Plymale, and MJ Daly. 2000. "Reduction of Fe(III) Cr(VI), and Te(VII) by Deinococcus Radiodurans R1." Applied and Environmental Microbiology 66(5):2006-2011. 

1999

  • Romine MF, LC Stillwell, KK Wong, SJ Thurston, EC Sisk, CW Sensen, T Gaasterland, JK Fredrickson, and JD Saffer. 1999. "Complete sequence of a 184 kb catabolic plasmid from Sphingomonas aromaticivorans strain F199." Journal of Bacteriology 181(5):1585-1602. 
  • Fredrickson JK, DL Balkwill, MF Romine, and T Shi. 1999. "Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp." Journal of Industrial Microbiology and Biotechnology 23(4-5):273-283. 
  • Fredrickson JK, DL Balkwill, MF Romine, and T Shi. 1999. "Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp." Journal of Industrial Microbiology and Biotechnology 23:273-283. 
  • Romine MF, JK Fredrickson, and SMW Li. 1999. "Induction of Aromatic Catabolic Activity in Sphingomonas Aromaticivorans Strain F199." Journal of Industrial Microbiology and Biotechnology 23:303-313. 
  • Tobin KJ, TC Onstott, MF Deflaun, FS Colwell, and JK Fredrickson. 1999. "In situ imaging of microorganisms in geologic material." Journal of Microbiological Methods 37:201-213. 

1998

  • Zachara JM, JK Fredrickson, SMW Li, DW Kennedy, SC Smith, and PL Gassman. 1998. "Bacterial Reduction of Crystalline Fe3+ Oxides in Single Phase Suspensions and Subsurface Materials." American Mineralogist 83(11-12):1426-1443. 

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