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Staff information

Amanda

Amanda White

Computational Mathematics
Scientist
Pacific Northwest National Laboratory
PO Box 999
MSIN: K7-90
Richland, WA 99352

PNNL Publications

2013

  • Gastelum ZN, AM White, PD Whitney, LJ Gosink, and LH Sego. 2013. "The Lifecycle of Bayesian Network Models Developed for Multi-Source Signature Assessment of Nuclear Programs." In IEEE International Conference on Intelligence and Security Informatics (ISI 2013), June 4-7, 2013, Seattle, Washington, ed. K Glass, et al, pp. 339-345.  IEEE, Piscataway, NJ.  doi:10.1109/ISI.2013.6578855

2012

  • Choo J, SJ Bohn, GC Nakamura, AM White, and H Park. 2012. "Heterogeneous Data Fusion via Space Alignment Using Nonmetric Multidimensional Scaling." In 2012 SIAM International Conference on Data Mining, April 26-28, 2012, Anaheim, California, pp. 177-188.  SIAM, Philadelphia, PA. 
  • Janik T, AM White, NH Pawley, KL Myers, and CS Oehmen. 2012. Annotated Bibliography for the MATADOR ProjectPNNL-21448, Pacific Northwest National Laboratory, Richland, WA. 

2011

  • White AM, DS Daly, and RC Zangar. 2011. "Analysis of High-Throughput ELISA Microarray Data." In Bioinformatics for Comparative Proteomics, Methods in Molecular Biology, vol. 694, ed. CH Wu and C Chen, pp. 191-211.  Humana Press, New York, NY. 
  • Coles GA, AJ Brothers, PD Whitney, AC Dalton, J Olson, AM White, SK Cooley, PM Youchak, and SV Stafford. 2011. Utility of Social Modeling in Assessment of a State's Propensity for Nuclear ProliferationPNNL-20492, Pacific Northwest National Laboratory, Richland, WA. 
  • Sanfilippo AP, RS Butner, AJ Cowell, AC Dalton, JN Haack, SJ Kreyling, RM Riensche, AM White, and PD Whitney. 2011. "Technosocial Predictive Analytics for Illicit Nuclear Trafficking." In SBP'11: Proceedings of the 4th International Conference on Social Computing, Behavioral-Cultural Modeling and Prediction, March 29-31, 2011, College Park, MD. Lecture Notes in Computer Science, vol. 6589, ed. J Salerno, SJ Yang, D Nau and SK Chai, pp. 374-381.  Springer-Verlag, Heidelberg, Germany.  doi:10.1007/978-3-642-19656-0_51
  • Whitney PD, AM White, SJ Walsh, AC Dalton, and AJ Brothers. 2011. "Bayesian Networks for Social Modeling." In SBP 2011: Proceedings of the 4th International Conference on Social Computing, Behavioral-Cultural Modeling, and Prediction, March 29-31, 2011, College Park, MD: Lecture Notes in Computer Science, vol. 6589, ed. J Salerno, SJ Yang, D Nau and SK Chai, pp. 227-235.  Springer-Verlag, Heidelberg , Germany.  doi:10.1007/978-3-642-19656-0_33

2010

  • Daly DS, KK Anderson, SL Seurynck-Servoss, RM Gonzalez, AM White, and RC Zangar. 2010. "An internal calibration method for protein-array studies ." Statistical Applications in Genetics and Molecular Biology 9(1):Article Number: 14. 
  • Walsh SJ, AC Dalton, PD Whitney, and AM White. 2010. "Parameterizing Bayesian network Representations of Social-Behavioral Models by Expert Elicitation ." In IEEE International Conference on Intelligence and Security Informatics (ISI 2010), pp. 227-232.  Institute of Electrical and Electronics Engineers, Inc,, Piscataway, NJ.  doi:10.1109/ISI.2010.5484730

2009

  • White AM, JL Collett, SL Seurynck-Servoss, DS Daly, and RC Zangar. 2009. "ELISA-BASE: An Integrated Bioinformatics Tool for Analyzing and Tracking ELISA Microarray Data." Bioinformatics 25(12):1566-1567. 
  • Chappell AR, A Bladek, CA Joslyn, EJ Marshall, LR McGrath, PR Paulson, SE Stolberg, and AM White. 2009. "Supporting the Analytic Knowledge Manager: Formal Methods for Ontology Display and Management." In ONTOLOGY FOR THE INTELLIGENCE COMMUNITY: OIC 2009 .  Center of Excellence in Command, Control, Communications, Computing and Intelligence (C4I), Fairfax, VA. 
  • Joslyn CA, RL Baddeley, J Blake, C Bult, M Dolan, RM Riensche, KD Rodland, AP Sanfilippo, and AM White. 2009. "Automated Annotation-Based Bio-Ontology Alignment with Structural Validation." In International Conference on Biomedical Ontology (ICBO), July 24-26, 2009, Buffalo, New York, ed. B Smith.  University of Buffalo, Buffalo, NY. 
  • Taylor RC, M Singhal, DS Daly, JM Gilmore, WR Cannon, KO Domico, AM White, DL Auberry, KJ Auberry, BS Hooker, GB Hurst, JE McDermott, WH McDonald, DA Pelletier, DA Schmoyer, and HS Wiley. 2009. "An analysis pipeline for the inference of protein-protein interaction networks." International Journal of Data Mining and Bioinformatics 3(4) (Sp. Iss. SI):409-430. 

2008

  • Gilmore JM, DL Auberry, JL Sharp, AM White, KK Anderson, and DS Daly. 2008. "A Bayesian Estimator of Protein-Protein Association Probabilities ." Bioinformatics 24(13):1554-1555.  doi:10.1093/bioinformatics/btn238
  • Daly DS, KK Anderson, AM White, RM Gonzalez, SM Varnum, and RC Zangar. 2008. "Predicting protein concentrations with ELISA microarray assays, monotonic splines and Monte Carlo simulation." Statistical Applications in Genetics and Molecular Biology 7(1):Article 21. 

2007

  • Posse C, AM White, and N Beagley. 2007. "Human-Centered Fusion Framework." In 2007 IEEE Conference on Technologies for Homeland Security: Enhancing Critical Infrastructure Dependability, May 16-17, 2007, Woburn, MA, pp. 111-116.  Institute of Electrical and Electronics Engineers, Piscataway, NJ.  doi:10.1109/THS.2007.370030
  • Seurynck-Servoss SL, AM White, CL Baird, KD Rodland, and RC Zangar. 2007. "Evaluation of Surface Chemistries for Antibody Microarrays." Analytical Biochemistry 371(1):105-115. 
  • Sharp JL, KK Anderson, GB Hurst, DS Daly, DA Pelletier, WR Cannon, DL Auberry, DD Schmoyer, WH McDonald, AM White, BS Hooker, KD Victry, MV Buchanan, V Kery, and HS Wiley. 2007. "Statistically Inferring Protein-Protein Asociations with Affinity Isolation LC-MS/MS Assays." Journal of Proteome Research 6(9):3788-3795.  doi:10.1021/pr0701106
  • Taylor RC, M Singhal, DS Daly, KO Domico, AM White, DL Auberry, KJ Auberry, BS Hooker, GB Hurst, JE McDermott, WH McDonald, DA Pelletier, DD Schmoyer, and WR Cannon. 2007. "SEBINI-CABIN: An Analysis Pipeline for Biological Network Inference, with a Case Study in Protein-Protein Interaction Network Reconstruction ." In Sixth International Conference on Machine Learning and Applications, (ICMLA 2007) , pp. 587-593.  IEEE Computer Society, Washington DC.  doi:10.1109/ICMLA.2007.63

2006

  • White AM, DS Daly, SM Varnum, KK Anderson, N Bollinger, and RC Zangar. 2006. "ProMAT: protein microarray analysis tool ." Bioinformatics 22(10):1278-1279.  doi:10.1093/bioinformatics/btl093
  • Chandler DP, O Alferov, B Chernov, DS Daly, J Golova, AN Perov, M Protic, R Robison, M Shipma, AM White, and AR Willse. 2006. "Diagnostic Oligonucleotide Microarray Fingerprinting of Bacillus Isolates." Journal of Clinical Microbiology 44(1):244-250.  doi:10.1128/JCM.44.1.244-250.2066
  • Sanfilippo AP, SC Tratz, ML Gregory, AR Chappell, PD Whitney, C Posse, PR Paulson, B Baddeley, RE Hohimer, and AM White. 2006. "Ontological Annotation with WordNet." In SemAnnot 2005, 5th International Workshop on Knowledge Markup and Semantic Annotation, 7th November 2005, Galway, Ireland, vol. 185, ed. Siegfried Handschuh, Thierry Declerck, & Marja-Riitta Koivun, pp. 27-36.  Sun SITE Central Europe Workshop Proceedings (CEUR-WS.org), Aachen, Germany. 
  • Sanfilippo AP, SC Tratz, ML Gregory, AR Chappell, PD Whitney, C Posse, PR Paulson, BL Baddeley, RE Hohimer, and AM White. 2006. "Automating Ontological Annotation with WordNet." In Proceedings of the Third International Global WordNet Conference (GWC-06), Jan. 22-26, South Jeju Island, Korea, ed. Petr Sojka, Key-Sun Choi, Christiane Fellbaum & Piek Vossen, pp. 85-93.  Masaryk University, Brno, Czech Republic. 
  • Zangar RC, DS Daly, and AM White. 2006. "ELISA microarray technology as a high-throughput system for cancer biomarker validation ." Expert Review of Proteomics 3(1):37-44.  doi:10.1586/14789450.3.1.37

2005

  • White AM, DS Daly, AR Willse, M Protic, and DP Chandler. 2005. "Automated Microarray Image Analysis Toolbox for MATLAB." Bioinformatics 21(17):3578-3579.  doi:doi:10.1093/bioinformatics/bti576
  • Daly DS, AM White, SM Varnum, KK Anderson, and RC Zangar. 2005. "Evaluating concentration estimation errors in ELISA microarray experiments." BMC Bioinformatics 6:17.  doi:10.1186/1471-2105-6-17.
  • Willse AR, DP Chandler, AM White, M Protic, DS Daly, and SC Wunschel. 2005. "Comparing Bacterial DNA Microarray Fingerprints." Statistical Applications in Genetics and Molecular Biology 4(1):Article 19 (38 pages). 

2004

  • Visher J, S Wandzura, and AM White. 2004. "Stable, high-order discretization for evolution of the wave equation in 1+1 dimensions ." Journal of Computational Physics 194(2):395-408. 

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