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Fundamental and Computational Sciences Directorate

Staff information

Erika Zink

IO Engagement & Performance
Scientist
Pacific Northwest National Laboratory
PO Box 999
MSIN: J4-02
Richland, WA 99352

PNNL Publications

2017

  • Smallwood HS, S Duan, M Morfouace, S Rezinciuc, BL Shulkin, A Shelat, EM Zink, S Milasta, R Bajracharya, AJ Oluwaseum, MF Roussel, DR Green, L Pasa Tolic, and PG Thomas. 2017. "Targeting Metabolic Reprogramming by Influenza Infection for Therapeutic Intervention." Cell Reports 19(8):1640-1653.  doi:10.1016/j.celrep.2017.04.039
  • Burnum-Johnson KE, JE Kyle, AJ Eisfeld, CP Casey, KG Stratton, JF Gonzalez, F Habyarimana, NM Negretti, AC Sims, S Chauhan, LB Thackray, P Halfmann, KB Walters, YM Kim, EM Zink, CD Nicora, KK Weitz, BJM Webb-Robertson, ES Nakayasu, B Ahmer, M Konkel, VL Motin, R Baric, MS Diamond, Y Kawaoka, KM Waters, RD Smith, and TO Metz. 2017. "MPLEx: A method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling." Analyst 142(3):442-448.  doi:10.1039/c6an02486f
  • Dautel SE, JE Kyle, GCD Clair, RL Sontag, KK Weitz, AK Shukla, SN Nguyen, YM Kim, EM Zink, T Luders, C Frevert, SA Gharib, J Laskin, JP Carson, TO Metz, RA Corley, and CK Ansong. 2017. "Lipidomics reveals dramatic lipid compositional changes in the maturing postnatal lung." Scientific Reports 7:Article No. 40555.  doi:10.1038/srep40555
  • Kyle JE, CP Casey, KG Stratton, EM Zink, YM Kim, X Zheng, ME Monroe, KK Weitz, KJ Bloodsworth, DJ Orton, YM Ibrahim, RJ Moore, C Lee, C Pedersen, ES Orwoll, RD Smith, KE Burnum-Johnson, and EM Baker. 2017. "Comparing Identified and Statistically Significant Lipids and Metabolites in 15-Year Old Serum and Dried Blood Spot Samples for Longitudinal Studies." Rapid Communications in Mass Spectrometry 31(5):447-456.  doi:10.1002/rcm.7808
  • Snijders AM, SA Langley, YM Kim, CJ Brislawn, C Noecker, EM Zink, SJ Fansler, CP Casey, D Miller, Y Huang, GH Karpen , SE Celniker, JB Brown, EA Borenstein, JK Jansson, TO Metz, and JH Mao. 2017. "Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome." Nature Microbiology 2(2):Article No. 16221.  doi:10.1038/nmicrobiol.2016.221

2016

  • Clair GCD, PD Piehowski, T Nicola, J Kitzmiller, EL Huang, EM Zink, RL Sontag, DJ Orton, RJ Moore, JP Carson, RD Smith, J Whitsett, RA Corley, N Ambalavanan, and CK Ansong. 2016. "Spatially-Resolved Proteomics: Rapid Quantitative Analysis of Laser Capture Microdissected Alveolar Tissue Samples." Scientific Reports 6:Article No. 39223.  doi:10.1038/srep39223
  • Otwell AE, SJ Callister, EM Zink, RD Smith, and RE Richardson. 2016. "Comparative Proteomic Analysis of Desulfotomaculum reducens MI-1: Insights into the Metabolic Versatility of a Gram-positive Sulfate- and Metal-reducing Bacterium." Frontiers in Microbiology 7:191.  doi:10.3389/fmicb.2016.00191
  • Salvachua D, R Katahira, NS Cleveland, P Khanna, MG Resch, BA Black, SO Purvine, EM Zink, A Prieto, MJ Martinez, AT Martinez, BA Simmons, JM Gladden, and GT Beckham. 2016. "Lignin depolymerization by fungal secretomes and a microbial sink." Green Chemistry 18(22):6046-6062.  doi:10.1039/C6GC01531J
  • Tisoncik-Go J, DJ Gasper, JE Kyle, AJ Eisfeld, C Selinger, M Hatta, J Morrison, MJ Korth, EM Zink, YM Kim, AA Schepmoes, CD Nicora, SO Purvine, KK Weitz, X Peng, R Green, SC Tilton, BJM Webb-Robertson, KM Waters, TO Metz, RD Smith, Y Kawaoka, M Suresh, L Josset, and MG Katze. 2016. "Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism." Cell Host & Microbe 19(2):254-66.  doi:10.1016/j.chom.2016.01.002
  • Zeiner CA, SO Purvine, EM Zink, L Pasa Tolic, DL Chaput, S Haridas, S Wu, KM LaButti, IV Grigoriev, B Henrissat, CM Santelli, and CM Hansel. 2016. "Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi." PLoS One 11(7):Article No. e0157844.  doi:10.1371/journal.pone.0157844
  • Zhang X, MV Romm, X Zheng, EM Zink, YM Kim, KE Burnum-Johnson, DJ Orton, A Apffel, YM Ibrahim, ME Monroe, RJ Moore, JN Smith, J Ma, RS Renslow, DG Thomas, A Blackwell, G Swinford, J Sausen, RT Kurulugama Lekamlage, N Eno, E Darland, G Stafford, JC Fjeldsted, TO Metz, JG Teeguarden, RD Smith, and ES Baker. 2016. "SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in bio?uids." Clinical Mass Spectrometry 2:1-10.  doi:10.1016/j.clinms.2016.11.002

2015

  • Lovelace ES, J Wagoner, J MacDonald, T Bammler, J Bruckner, J Brownell, R Beyer, EM Zink, YM Kim, JE Kyle, BJM Webb-Robertson, KM Waters, TO Metz, F Farin, NH Oberlies, and S Polyak. 2015. "Silymarin Suppresses Cellular Inflammation By Inducing Reparative Stress Signaling." Journal of Natural Products 78(8):1990-2000.  doi:10.1021/acs.jnatprod.5b00288

2014

  • Ansong C, NC Sadler, EA Hill, MP Lewis, EM Zink, RD Smith, AS Beliaev, A Konopka, and AT Wright. 2014. "Characterization of protein redox dynamics induced during light-to-dark transitions and nutrient limitation in cyanobacteria." Frontiers in Microbiology 5:Article No. 325.  doi:10.3389/fmicb.2014.00325
  • Cao L, N Tolic, Y Qu, D Meng, R Zhao, Q Zhang, RJ Moore, EM Zink, MS Lipton, L Pasa-Tolic, and S Wu. 2014. "Characterization of intact N- and O-linked glycopeptides using higher energy collisional dissociation." Analytical Biochemistry 452:96-102.  doi:10.1016/j.ab.2014.01.003
  • Qu Y, J Feng, S Deng, L Cao, Q Zhang, R Zhao, Z Zhang, Y Jiang, EM Zink, SE Baker, MS Lipton, L Pasa-Tolic, JZ Hu, and S Wu. 2014. "Structural Analysis of N- and O-glycans Using ZIC-HILIC/Dialysis Coupled to NMR Detection." Fungal Genetics and Biology : FG & B 72:207-215.  doi:10.1016/j.fgb.2014.08.001
  • Sadler NC, MR Melnicki, MH Serres, ED Merkley, WB Chrisler, EA Hill, MF Romine, S Kim, EM Zink, S Datta, RD Smith, AS Beliaev, A Konopka, and AT Wright. 2014. "Live Cell Chemical Profiling of Temporal Redox Dynamics in a Photoautotrophic Cyanobacterium." ACS Chemical Biology 9(1):291-300.  doi:10.1021/cb400769v
  • Webb-Robertson BJM, YM Kim, EM Zink, KA Hallaian, Q Zhang, R Madupu, KM Waters, and TO Metz. 2014. "A Statistical Analysis of the Effects of Urease Pre-Treatment on the Measurement of the Urinary Metabolome by Gas Chromatography-Mass Spectrometry." Metabolomics 10(5):897-908.  doi:10.1007/s11306-014-0642-1

2013

  • Anderson LN, DE Culley, BA Hofstad, LM Chauvigne-Hines, EM Zink, SO Purvine, RD Smith, SJ Callister, JM Magnuson, and AT Wright. 2013. "Activity-based protein profiling of secreted cellulolytic enzyme activity dynamics in Trichoderma reesei QM6a, NG14, and RUT-C30." Molecular Biosystems 9(12):2992-3000.  doi:10.1039/c3mb70333a
  • Qu Y, S Wu, R Zhao, EM Zink, DJ Orton, RJ Moore, D Meng, TRW Clauss, JT Aldrich, MS Lipton, and L Pasa-Tolic. 2013. "Automated Immobilized Metal Affinity Chromatography System for Enrichment of Escherichia coli Phosphoproteome." Electrophoresis 34(11):1619-1626.  doi:10.1002/elps.201200628

2012

  • Sadler NC, TE Angel, MP Lewis, LM Pederson, LM Chauvigne-Hines, SD Wiedner, EM Zink, RD Smith, and AT Wright. 2012. "Activity-Based Protein Profiling Reveals Mitochondrial Oxidative Enzyme Impairment and Restoration in Diet-Induced Obese Mice." PLoS One 7(10):Article No. e47996.  doi:10.1371/journal.pone.0047996

2011

  • Polacco BJ, SO Purvine, EM Zink, SP LaVoie, MS Lipton, AO Summers, and SM Miller. 2011. "Discovering Mercury Protein Modifications in Whole Proteomes Using Natural Isotope Distributions Observed in Liquid Chromatography-Tandem Mass Spectrometry." Molecular & Cellular Proteomics. MCP 10(8):Art. No. 10: M110.004853.  doi:10.1074/mcp.M110.004853

2010

  • Fraga CG, BH Clowers, RJ Moore, and EM Zink. 2010. "Signature-Discovery Approach for Sample Matching of a Nerve-Agent Precursor using Liquid Chromatography-Mass Spectrometry, XCMS, and Chemometrics." Analytical Chemistry 82(10):4165-4173. 

2005

  • Zink EM, RJ Clark, KE Grant, JA Campbell, and EW Hoppe. 2005. "Analytical Methodologies for Detection of Gamma-Valerolactone, Delta-Valerolactone, Acephate, and Azinphos Methyl and Their Associated Metabolites in Complex Biological Matrices." Journal of Undergraduate Research V:96-101. 
  • Zink EM, RJ Clark, KE Grant, JA Campbell, and EW Hoppe. 2005. "Analytical Methodologies for Detection of Gamma-valerolactone, Delta-valerolactone, Acephate, and Azinphos Methyl and their Associated Metabolites in Complex Biological Matrices." Journal of Undergraduate Research 5:95-101. 

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