Staff information
Anil Shukla
Omic Technol Devlp & Productn
Scientist
Pacific Northwest National Laboratory
PO Box 999
MSIN: K8-98
Richland, WA 99352
509/371-6239
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PNNL Publications
2013
- Ansong C, C Ortega, SH Payne, DH Haft, LM Chauvigne-Hines, MP Lewis, AR Ollodart, SO Purvine, AK Shukla, S Fortuin, RD Smith, JN Adkins, C Grundner, and AT Wright. 2013. "Identification of widespread adenosine nucleotide binding in Mycobacterium tuberculosis." Chemistry & Biology 20(1):123-133. doi:10.1016/j.chembiol.2012.11.008
- Aryal UK, SJ Callister, S Mishra, X Zhang, JI Shutthanandan, TE Angel, AK Shukla, ME Monroe, RJ Moore, DW Koppenaal, RD Smith, and L Sherman. 2013. "Proteome Analyses of Strains ATCC 51142 and PCC 7822 of the Diazotrophic Cyanobacterium Cyanothece sp under Culture Conditions Resulting in Enhanced H-2 Production." Applied and Environmental Microbiology 79(4):1070-1077. doi:10.1128/AEM.02864-12
- Matzke MM, JN Brown, MA Gritsenko, TO Metz, JG Pounds, KD Rodland, AK Shukla, RD Smith, KM Waters, JE McDermott, and BJM Webb-Robertson. 2013. "A Comparative Analysis of Computational Approaches to Relative Protein Quantification Using Peptide Peak Intensities in Label-free LC-MS Proteomics Experiments." Proteomics 13(3-4):493-503. doi:10.1002/pmic.201200269
- Sims AC, SC Tilton, V Menachery, L Gralinski, A Schafer, MM Matzke, BJM Webb-Robertson, JH Chang, ML Luna, C Long, AK Shukla, A Bankhead, S Burkett, G Zornester, CK Tseng, TO Metz, R Pickles, SK Mcweeney, RD Smith, MG Katze, KM Waters, and R Baric. 2013. "Release of Severe Acute Respiratory Syndrome Coronavirus Nuclear Import Block Enhances Host Transcription in Human Lung Cells." Journal of Virology 87(7):3885-902. doi:10.1128/JVI.02520-12
- Su D, AK Shukla, B Chen, JS Kim, ES Nakayasu, Y Qu, UK Aryal, KK Weitz, TRW Clauss, ME Monroe, DG Camp, II, DJ Bigelow, RD Smith, RN Kulkarni, and W Qian. 2013. "Quantitative Site-specific Reactivity Profiling of S-Nitrosylation in Mouse Skeletal Muscle Using Cysteinyl Peptide Enrichment Coupled with Mass Spectrometry." Free Radical Biology & Medicine 57:68-78. doi:10.1016/j.freeradbiomed.2012.12.010
2012
- Wiedner SD, KE Burnum, LM Pederson, LN Anderson, S Fortuin, LM Chauvigne-Hines, AK Shukla, C Ansong, EA Panisko, RD Smith, and AT Wright. 2012. "Multiplexed Activity-based Protein Profiling of the Human Pathogen Aspergillus fumigatus Reveals Large Functional Changes upon Exposure to Human Serum." Journal of Biological Chemistry 287(40):33447-33459. doi:10.1074/jbc.M112.394106
- Wiedner SD, KE Burnum, LM Pederson, LN Anderson, S Fortuin, LM Chauvigne-Hines, AK Shukla, C Ansong, EA Panisko, RD Smith, and AT Wright. 2012. "Multiplexed Activity-Based Protein Profiling of the Human Pathogen Aspergillus fumigatus Reveals Large Functional Changes Upon Exposure to Human Serum." Journal of Biological Chemistry 287(40):33447-33459. doi:10.1074/jbc.M112.394106
- Angel TE, JM Jacobs, RP Smith, MS Pasternack, S Elias, MA Gritsenko, AK Shukla, EC Gilmore, C McCarthy, DG Camp, II, and RD Smith. 2012. "Cerebrospinal Fluid Proteome of Patients with Acute Lyme Disease." Journal of Proteome Research 11(10):4814-4822. doi:10.1021/pr300577p
- Brown JN, GM Ortiz, TE Angel, JM Jacobs, MA Gritsenko, EY Chan, DE Purdy, RD Murnane, K Larsen, RE Palermo, AK Shukla, TRW Clauss, MG Katze, JM McCune, and RD Smith. 2012. "Morphine Produces Immunosuppressive Effects in Non-human Primates at the Proteomic and Cellular Levels." Molecular & Cellular Proteomics. MCP 11(9):605-618. doi:10.1074/mcp.M111.016121
- Zhou J, GP Dann, T Shi, L Wang, X Gao, D Su, CD Nicora, AK Shukla, RJ Moore, T Liu, DG Camp, II, RD Smith, and W Qian. 2012. "Simple Sodium Dodecyl Sulfate-Assisted Sample Preparation Method for LC-MS-based Proteomic Applications." Analytical Chemistry 84(6):2862-2867. doi:10.1021/ac203394r
2011
- Shukla AK, R Zhang, DJ Orton, R Zhao, TRW Clauss, RJ Moore, and RD Smith. 2011. "Formation of iron complexs from trifluoroacetic acid based liquid chromatography mobile phases as interference ions in liquid chromatography/electrospray ionization mass spectrometric analysis." Rapid Communications in Mass Spectrometry 25(10):1452-1456. doi:10.1002/rcm.5017
2007
- Shukla AK. 2007. "Bimodal Energy Distributions in the Scattering of Ar+ Ions from Modified Surfaces at Hyperthermal Energies." Chemical Physics Letters 449(1-3):53-56. doi:10.1016/j.cplett.2007.10.043
- Shukla AK. 2007. "Fragmentation dynamics of CS22+ on collision with a self assembled monolayer surface." Chemical Physics Letters 448(4-6):156-158. doi:10.1016/j.cplett.2007.09.083
- Rezayat T, and AK Shukla. 2007. "Dissociative Scattering of Hyperthermal Energy CF3+ Ions from Modified Surfaces." Journal of Chemical Physics 126(8):Art. No. 084701. doi:10.1063/1.2484290
- Rezayat T, and AK Shukla. 2007. "Evidence for the Bulk Nature of Self-Assembled Monolayer Surface of Fluorinated Alkyl Thiol from Hyperthermal Energy Ion-Surface Collisions." Nuclear Instruments and Methods in Physics Research. Section B, Beam Interactions with Materials and Atoms 264(2):400-403. doi:10.1016/j.nimb.2007.08.083
2004
- Rezayat T, and AK Shukla. 2004. "Hyperthermal Energy Collisions of CF3+ Ions With Modified Surfaces: Surface-Induced Dissociation." Journal of Undergraduate Research Volume IV, 2004:98-103.
2003
- Laskin J, JH Futrell, and AK Shukla. 2003. "Surface-Induced Dissociation of Peptide Ions: Kinetics and Dynamics." Journal of the American Society for Mass Spectrometry 14(12):1340-1347.
- Shukla AK, and JH Futrell. 2003. ""Surface-Induced Dissociation of Acetone Cations from Self-Assembled Monolayer Surface of Flourinated Alkyl Thiol on Au (111) Substrate at Low Collision Energies"." International Journal of Mass Spectrometry 228(2-3):563-576.
- Shukla AK, and JH Futrell. 2003. "A Beam Scattering Instrument for the Dynamics Studies of Surface-Induced Dissociation Processes." Review of Scientific Instruments 74(1):168-175.
- Shukla AK, and JH Futrell. 2003. "Dynamics of Hyperthermal Energy Ion-Surface Collisions: Dissociative and non-dissociative Scattering of Ethanol cations from a Self-Assembled Monolayer Surface of Fluorinated Alkyl Thiol on Au (111)." International Journal of Mass Spectrometry 223(1-3):783-801.
- Shukla AK, JH Futrell, and A Sen. 2003. "Dynamics of the Dissociative and Non-dissociative Scattering of Hyperthermal CS2+ from a Self-Assembled Fluoroalkyl Monolayer Surface on Gold Substrate." Journal of Chemical Physics 118(24):11217-11225. doi:DOI:10.1063/1.1574311
2002
- Laskin J, E Denisov, AK Shukla, SE Barlow, and JH Futrell. 2002. "Surface-induced dissociation in a Fourier transform ion cyclotron resonance mass spectrometer: Instrument design and evaluation." Analytical Chemistry 74:3255-3261.
2000
- Shukla AK, and JH Futrell. 2000. "Tandem Mass Spectrometry: Dissociation of Ions by Collisional Activation." Journal of Mass Spectrometry 35(9):1069-1090.