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Chemical Imaging Initiative

Publications and Presentations

Browning ND.  2012. "In-Situ TEM: From high spatial to high temporal resolution."  Presented by Nigel Browning (Invited Speaker) at Sanken International Symposium, Osaka, Japan on January 12, 2012. PNNL-SA-84906.

Browning ND, I Arslan, MA Bonds, JE Evans, KL Jungjohann, J McKeown, S Mehraeen, LR Parent, WD Ristenpart, and TJ Woehl.  2011. "In-Situ TEM: From High Spatial Resolution to High Temporal Resolution." Abstract submitted to Sanken International Symposium, Osaka, Japan.  PNNL-SA-83860.

Chambers SA.  2010. "Epitaxial film growth methods & x-ray photoelectron spectroscopy in the study of advanced photocathode materials."  Presented by Scott A. Chambers (Invited Speaker) at Photocathode Physics for Photoinjectors Workshop, Upton, NY on October 13, 2010. PNNL-SA-80918. 

Dagle RA, H Wan, L Kovarik, MD Flake, Y Su, KO Albrecht, DL King, JF White, and MA Gerber.  2011.  "Noble-Metal Based Catalysts for Biomass-Derived Methane and Tar Reforming." Presented by Robert A. Dagle at North American Catalysis Meeting, Detroit, MI on June 7, 2011. PNNL-SA-80360. 

Enlow MA, T Ju, I Kakadiaris, and JP Carson.  2011.  "Lossless 3-D reconstruction and registration of semi-quantitative gene expression data in the mouse brain."  In Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2011), August 30-September 3, 2011, Boston, Massachusetts, pp. 8086-8089. IEEE, Piscataway, NJ. 

Ghorai S, A Laskin, and AV Tivanski.  2011.  "Spectroscopic Evidence of Keto-enol Tautomerism in Deliquesced Malonic Acid Particles."  Journal of Physical Chemistry A 115(17):4373-4380.  doi:10.1021/jp112360x

Heath BS, PJ Roach, J Laskin, and A Laskin.  2010.  "Applications of Nano-DESI technology to reactive aerosol analysis and chemical imaging." Abstract submitted to Department of Energy, SULI deliverable, Richland, WA. PNNL-SA-76890.

Heath BS, PJ Roach, J Laskin, MJ Marshall, DF Smith, L Pasa-Tolic, Z Zhu, JD Watrous, and PC Dorrestein. 2011. "Identification of Mechanisms of Extracellular Respiration by Shewanella oneidensis MR-1 Using Imaging Mass Spectrometry."  Presented by Brandi S. Heath at ASMS American Society for Mass Spectrometry and Allied Topics, 59th, Denver, CO on June 7, 2011. PNNL-SA-80606.

Heath BS, PJ Roach, J Laskin, MJ Marshall, DF Smith, L Pasa-Tolic, Z Zhu, JD Watrous, and PC Dorrestein.  2011.  "Identification of Mechanisms of Extracellular Respiration By Shewanella oneidensis MR-1 Using Imaging Mass Spectrometry."  Abstract submitted to ASMS American Society for Mass Spectrometry and Allied Topics, 59th, Denver, CO.  PNNL-SA-77678.

Heath BS, PJ Roach, MJ Marshall, DE Smith, L Pasa-Tolic, Z Zhu, JD Watrous, PC Dorrestein, and J Laskin. 2011. "Identification of Metabolites Involved in Extracellular Respiration by Shewanella Oneidensis MR-1." Abstract submitted to 27th Asilomar for American Society for Mass Spectrometry, Pacific Grove, CA.  PNNL-SA-82515. 

Heath BS, PJ Roach, MJ Marshall, DE Smith, L Pasa-Tolic, Z Zhu, JD Watrous, PC Dorrestein, and J Laskin.  2011. "Identification of Metabolites Involved in Extracellular Respiration by Shewanella oneidensis MR-1."  Presented by Brandi Heath at American Society of Mass Spectrometry, 27th Asilomar Conference on Mass Specrtometry, Pacific Grove, CA on October 3, 2011. PNNL-SA-83083.

Heath BS, PJ Roach, MJ Marshall, DE Smith, L Pasa-Tolic, Z Zhu, PC Dorrestein, J Laskin, and JD Watrous.  2011. "Identification of Metabolites Involved in Extracellular Respiration by Shewanella oneidensis MR-1."  Presented by Brandi Heath at American Society for Mass Spectrometry,27th Asilomar Conference on Mass Spectrometry, Pacific Grove, CA, WA on October 3, 2011. PNNL-SA-83084.

Karakoti AS, SP Sanghavi, P Nachimuthu, P Yang, V Shutthanandan. V Thevuthasan. 2011. "Probing the size- and environment-induced phase transformation in CdSe quantum dots." The Journal of Physical Chemistry Letters 2(22):2925-2929. DOI: 10.1021/jz201243t

Karakoti AS, SP Sanghavi, P Nachimuthu, P Yang, V Shutthanandan, LJ Terminello, and S Thevuthasan.  2011.  "Probing the Size-Induced Electronic Structures of CdSe Quantum Dots."  Abstract submitted to Microscopy and Microanalysis Conference, Nashville, TN. PNNL-SA-78011.

Karakoti AS, SP Sanghavi, P Yang, P Nachimuthu, V Shutthanandan, LJ Terminello, and S Thevuthasan.  2011. "Probing the Size Induced Electronic Structures of CdSe Quantum dots."  Presented by Ajay Karakoti at Microscopy and Microanalysis Conference 2011, Nashville, TN on August 11, 2011. PNNL-SA-82053.

Karakoti AS, SP Sanghavi, P Yang, P Nachimuthu, V Shutthanandan, LJ Terminello, and S Thevuthasan.  2011.  "Probing the Size Induced Electronic Structures of CdSe Quantum dots."  Presented by Shail Sanghavi at AVS 58th International Symposium and Exhibition, Nashville, TN on October 31, 2011.  PNNL-SA-82053. 

Kleese van Dam K, D Li, SD Miller, ML Green, CL Ruby, and JW Cobb. 2011. "Challenges in Data Intensive Analysis at Scientific Experimental User Facilities." In Handbook of Data Intensive Computing, ed. Borko Furht and Armando Escalante, pp. 249-284. Springer, New York, NY.

Kleese van Dam K, DE Cowley, DR Einstein, I Gorton, AP Kuprat, LR O'Neil, J Yin, LJ Terminello, S Thevuthasan, JP Carson, D Li, G Lin, and YJ Liu.  2010.  "Moving towards supporting real time analysis and manipulation on a molecular level."  Presented by Kerstin Kleese van Dam (Invited Speaker) at NOBUGS 2010, Knoxville, TN on October 11, 2010.  PNNL-SA-75536. 

Kovarik L, RA Dagle, H Wan, JH Kwak, BC Kabius, CM Wang, S Thevuthasan, and CHF Peden.  2011. "Atomic level characterization of transition-metal catalytic clusters and nanoparticles on MgAl2O4 substrates."  Abstract submitted to Microscopy & Microanalysis 2011 Meeting, Nashville, TN.  PNNL-SA-78228.

Kovarik L, BC Kabius, CM Wang, S Thevuthasan, H Wan, RA Dagle, JH Kwak, and CHF Peden.  2011. "Atomic Level Characterization of Transition-metal Catalytic Clusters and Nanoparticles on MgAl2O4 Substrates."  Presented by Libor Kovarik at Microscopy and Microanalysis 2011, Nashville, TN on August 10, 2011. PNNL-SA-81974.

Kovarik L, JH Kwak, A Genc, J Szanyi, CM Wang, and CHF Peden.  2011.  "S/TEM tomography of y-Al2O3 morphology and Pt anchoring."  Abstract submitted to MRS Fall Meeting, Boston, MA.  PNNL-SA-80863. 

Kovarik L, JH Kwak, A Genc, A Qiu, CM Wang, J Szanyi, and CHF Peden. 2011. "S/TEM tomography of y-Al2O3 morphology and Pt anchoring." Presented by Libor Kovarik at 2011 MRS Fall Meeting, Boston, MA on November 29, 2011. PNNL-SA-84413.

Kuchibhatla SVNT, P Adusumilli, V Shutthanandan, BW Arey, CM Wang, L Kovarik, S Thevuthasan, TJ Prosa, RM Ulfig, A Buxbaum, YC Wang, and T Tessner.  2011.  "Embedded Nanoparticle Analysis using Atom Probe Tomography and High-Resolution Electron Microscopy."  Presented by Satyanarayana Kuchibhatla (Invited Speaker) at Microscopy and Microanalysis Conference 2011, Nashville, TN on August 12, 2011.  PNNL-SA-82087. 

Kurkure U, YH Le, N Paragios, T Ju, JP Carson, and I Kakadiaris.  2011.  "Markov Random Field-based Fitting of a Subdivision-based Geometric Atlas."  In 13th International Conference on Computer Vision (ICCV), Barcelona, Spain 11/6-13/2011.  PNWD-SA-9657, Battelle-Pacific Northwest Division, Richland, WA. 

Laskin J, BS Heath, IT Lanekoff, PJ Roach, JD Watrous, and PC Dorrestein.  2011."Chemical Imaging of Biological Systems Using Nanospray Desorption Electrospray Ionization Mass Spectrometry."  Abstract submitted to American Chemical Society (ACS) Spring 2012 National Meeting and Exposition, San Diego, CA.  PNNL-SA-83442.

Laskin J, BS Heath, PJ Roach, LH Cazares, and OJ Semmes.  2012.  "Tissue Imaging Using Nanospray Desorption Electrospray Ionization Mass Spectrometry."  Analytical Chemistry 84(1):141-148.  doi:10.1021/ac2021322

Laskin J, PJ Roach, BS Heath, JD Watrous, PC Dorrestein, LH Cazares, and J Semmes.  2011.  "Nanospray Desorption Electrospray Ionization: A New Technique for Ambient Imaging Mass Spectrometry."  Abstract submitted to ASMS American Society for Mass Spectrometry and Allied Topics, 59th, Denver, CO.  PNNL-SA-77685. 

Laskin J, PJ Roach, BS Heath, JD Watrous, PC Dorrestein, LH Cazares, and J Semmes.  2011.  "Nanospray Desorption Electrospray Ionization: A New Technique for Ambient Imaging Mass Spectrometry."  Presented by Julia Laskin at ASMS American Society for Mass Spectrometry and Allied Topics, 59th, Denver, CO on June 7, 2011.  PNNL-SA-80605. 

Li D.  2011.  "Application of chemical image reconstruction on materials science and technology."  In 2011 International Conference on Material Sciences and Technology.  PNNL-SA-80632, Pacific Northwest National Laboratory, Richland, WA. 

Li D, CA Lavender, EA Nyberg, X Sun, and MA Khaleel.  2011.  "Modeling of Deformation Behavior of Multiphase Wrought Magnesium."  Abstract submitted to TMS 2012, Orlando, FL.  PNNL-SA-81747. 

Li D, CA Lavender, X Sun, and MA Khaleel.  2011.  "Prediction of deformation behavior of non rare earth wrought magnesium under high strain rate."  Abstract submitted to 9th International conference on Magnesium alloys and their applications, Richland, WA.  PNNL-SA-83566. 

Li D, Y Li, F Gao, R Devanathan, X Sun, and MA Khaleel.  2011.  "Thermomechanical properties prediction of complex heterogeneous irradiated nuclear fuel."  Abstract submitted to TMS2012, Orlando, FL.  PNNL-SA-81762. 

Li D, MA Tschopp, MA Khaleel, and X Sun.  2012.  "Comparison of Reconstructed Spatial Microstructure Images Using Different Statistical Descriptors."  Computational Materials Science 51(1):437-444.  doi:10.1016/j.commatsci.2011.07.056

Li D, S Xin, and MA Khaleel.  2010.  "Thermomechanical property prediction of complex heterogeneous material system using signature microstructure."  Abstract submitted to 15th International Conference on Environmental Degradation of Materials in Nuclear Power Systems - Water Reactors, Colorado Springs, CO.  PNNL-SA-76388. 

Li D, HM Zbib, H Garmestani, X Sun, and MA Khaleel.  2011.  "Modeling of Irradiation Hardening of Polycrystalline Materials."  Computational Materials Science 50(8):2496-2501.  doi:10.1016/j.commatsci.2011.03.033

Li D, HM Zbib, X Sun, and MA Khaleel.  2011.  "FMM-Hierarchical Multi-scale with Statistical Upscaling of Continuum Properties."  Presented by Dongsheng Li (Invited Speaker) at 2011 NEAMS PI meeting, Chicago, IL on October 12, 2011.  PNNL-SA-83310. 

Liu Y, B Minofar, Y Desyaterik, EE Dames, Z Zhu, JP Cain, RJ Hopkins, MK Gilles, H Wang, P Jungwirth, and A Laskin.  2011.  "Internal Structure, Hygroscopic and Reactive Properties of Mixed Sodium Methanesulfonate-Sodium Chloride Particles."  Physical Chemistry Chemical Physics. PCCP 13(25):11846-11857.  doi:10.1039/c1cp20444k

Marshall MJ.  2011.  "Multi-System Analysis of Microbial Biofilms."  Abstract submitted to FY 2011 Early Career Selectee Abstracts Webpage, Online.  PNNL-SA-79958. 

Marshall MJ.  2011.  "Towards High Resolution Chemical Imaging to Characterize Microbial Biofilms: Integration of Synchrotron IR Imaging."  Abstract submitted to 2011 SRC User's Meeting, Stoughton, WI.  PNNL-SA-81978. 

Marshall MJ, B Cao, EA Miller, TA White, A Dohnalkova, BW Arey, and JK Fredrickson.  2011.  "Correlative High-Resolution Imaging and Spectroscopy to Characterize the Structure and Biogeochemical Function of Microbial Biofilms."  Presented by Matt Marshall (Invited Speaker) at COSMIC Workshop, Berkeley, CA on August 2, 2011.  PNNL-SA-81684. 

Marshall MJ, B Cao, EA Miller, A Dohnalkova, and JK Fredrickson.  2011.  "Correlative High-Resolution Imaging and Spectroscopy to Characterize the Structure and Biogeochemical Function of Microbial Biofilms."  Presented by Matt Marshall at Microscopy and Microanlysis Meeting 2011, Nashville, TN on August 10, 2011.  PNNL-SA-81734. 

Marshall MJ, A Dohnalkova, BW Arey, KH Williams, and JK Fredrickson.  2011.  "Visualization of hydrated bacterial structures by complementary electron microscopy techniques."  Abstract submitted to PNNL NSD Chem-Bio Open House, Richland, WA.  PNNL-SA-79820. 

Marshall MJ, A Dohnalkova, DW Kennedy, BW Arey, and JK Fredrickson.  2011.  "High Resolution Imaging to Characterize the Structure and Biogeochemical Function of Microbial Biofilms."  Abstract submitted to Microscopy and Microanalysis Meeting, Nashville, TN.  PNNL-SA-78017. 

Marshall MJ, A Dohnalkova, and JK Fredrickson.  2010.  "Correlative High Resolution Imaging and Spectroscopy to Characterize the Structure and Biogeochemical Function of Biofilm EPS."  Presented by Matt Marshall (Invited Speaker) at ANL Complexity Workshop, Argonne, IL on October 12, 2010.  PNNL-SA-75616. 

Marshall MJ, A Dohnalkova, DW Kennedy, BW Arey, AS Beliaev, and JK Fredrickson.  2010.  "Advances in Electron Microscopy for Studying the Microorganism- Mediated Reduction of Radionuclides in the Subsurface."  Presented by Matt Marshall (Invited Speaker) at Argonne National Lab Group Seminar Series, Argonne, IL on October 14, 2010.  PNNL-SA-75618. 

Miller EA, MJ Marshall, TA White, and A Dohnalkova.  2011.  "Investigating Microbial Biofilm Structure on Complex Substrates."  Presented by Erin Miller (Invited Speaker) at APS Users meeting May 2-5, 2011 on May 2, 2011.  PNNL-SA-80866. 

Nachimuthu P, AS Karakoti, SP Sanghavi, P Yang, V Shutthanandan, LJ Terminello, and S Thevuthasan.  2011.  "Probing the size-induced structural and electronic properties of CdSe quantum dots."  Abstract submitted to AVS 58th International Symposium & Exhibition 2011, Nashville, TN.  PNNL-SA-79794. 

Ryu S, and D Li.  2011.  "Efficient Microstructure 3D Stochastic Reconstruction with High Accuracy from Multiple Chemical Images."  In IEEE Computer Vision and Pattern Recognition (CVPR) 2011.  PNNL-SA-84587, Pacific Northwest National Laboratory, Richland, WA. 

Ryu S, and D Li.  2011.  "Integrating Multiresolution Chemical Imaging Instrumentation by Data Reduction and reconstruction."  Abstract submitted to International Conference on 3D Materials Science 2012, Seven Springs, PA.  PNNL-SA-84737. 

Smith DF, EW Robinson, AV Tolmachev, RM Heeren, and L Pasa-Tolic.  2011.  "C60 Secondary Ion Fourier Transform Ion Cyclotron Resonance Mass Spectrometry."  Analytical Chemistry 83(24):9552-9556.  doi:10.1021/ac2023348

Terminello LJ, S Thevuthasan, and TE Hui.  2010.  "Multi-Modal Chemical Imaging & PNNL."  Presented by Louis Terminello (Invited Speaker) at University of Maine, University of Maine, ME on December 3, 2010.  PNNL-SA-76753. 

Terminello LJ, AA Campbell, and D Ray.  2011.  "Advanced Imaging at PNNL: Building Leadership Capability for the Chemical, Materials, Biological and Environmental Sciences."  Presented by Douglas Ray, Allison Campbell and Louis Terminello (Invited Speaker) at Bill Brinkman, SC-1, WDC, DC on May 11, 2011.  PNNL-SA-79950. 

Thevuthasan S, LJ Terminello, and TE Hui.  2010.  "Chemical Imaging Activities Associated with Nanoparticles at Pacific Northwest National Laboratory."  Abstract submitted to Challenges in Characterizing Small Particles: Exploring Particles from the Nano- to Microscales, Washington DC, DC.  PNNL-SA-75622. 

Valentine NB.  2010.  "Physical Chemical Analysis - Organic Indicators of Culturing and Processing Methods."  Presented by Valentine, Nancy (Invited Speaker) at National Bio-Threat Conference, New Orlenes, LA on December 7, 2010.  PNNL-SA-75127. 

Yang P, S Tretiak, and S Ivanov.  2011.  "Influence of Surfactants and Charges on CdSe Quantum Dots."  Journal of Cluster Science 22(3):405-431.  doi:10.1007/s10876-011-0398-y

Zhang LQ, XH Liu, Y Liu, S Huang, T Zhu, L Gui, SX Mao, ZZ Ye, CM Wang, JP Sullivan, and JY Huang.  2011.  "Controlling the Lithiation-Induced Strain and Charging Rate in Nanowire Electrodes by Coating."  ACS Nano 5(6):4800-4809.  doi:10.1021/nn200770p

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