October 10, 2023
Report

Graman: Graph Network Based Simulator for Forecasting Molecular Polarizability

Abstract

This report presents the work performed under the GRaman project, sponsored by the PCSD LDRD Seed program. The project aimed at accelerating ab initio molecular dynamics simulation using Graph Networks. The Graph Network framework is a ML framework that has been successfully employed to simulate the dynamics of several physical systems: including water splashing in a container and flags moving with the wind. In this effort, we performed a data collection campaign for 3 different molecules of interest. We have built tools for preprocessing the trajectories obtained by simulating Raman Spectroscopy with NWChem and translating them into a suitable format for training. We have developed a training algorithm to train the Graph Network based simulators based on our data and developed a simulator that produces trajectories in the same NWChem format. While the tool has improved with each iteration of development and subsequent experiments, the current state of the tool does not allow to directly incorporate the technology within the NWChem framework because the trajectories produced by the tool are not yet accurate enough. However, the technology has proved to have good potential and it is certainly worth further research and development.

Published: October 10, 2023

Citation

Minutoli M., M. Halappanavar, E. Apra, P.Z. El-Khoury, and N. Govind. 2023. Graman: Graph Network Based Simulator for Forecasting Molecular Polarizability Richland, WA: Pacific Northwest National Laboratory.