Publications

Peer-reviewed Journal Articles:

Vrionis, Helen A., Robert T. Anderson, Irene Ortiz-Bernad, Kathleen R. O'Neill1, Charles, T. Resch, Aaron D. Peacock, Richard Dayvault, David C. White, Philip E. Long, and Derek R. Lovley. 2005 Microbiological and Geochemical Heterogeneity in an In Situ Uranium Bioremediation Field Site. Appl Environ Microbiol. Accepted for publication.

Schryver, J.C., C.C. Brandt, S.M. Pfiffner, A.V. Palumbo, A.D. Peacock, D.C. White, J.P. McKinley, and P.E. Long. 2005. Application of nonlinear analysis methods for identifying relationships between microbial community structure and groundwater geochemistry. Microbial Ecology. Accepted for publication.

Ortiz-Bernad I, Anderson RT, Vrionis HA, and Lovley DR. 2004. Resistance of Solid-Phase U(VI) to Microbial Reduction during In Situ Bioremediation of Uranium-Contaminated Groundwater. Appl Environ Microbiol. 70(12): 7558-60

Ortiz-Bernad I, Anderson RT, Vrionis HA, Lovley DR. 2004. Vanadium Respiration by Geobacter metallireducens: Novel Strategy for In Situ Removal of Vanadium from Groundwater Appl Environ Microbiol. 70(5): 3091-3095

Nevin KP, Finneran KT, Lovley DR. 2003. Microorganisms Associated with Uranium Bioremediation in a High-Salinity Subsurface Sediment Appl Environ Microbiol. 69(6): 3672- 3675.

Robert T. Anderson, Helen A. Vrionis, Irene Ortiz-Bernad, Charles T. Resch, Philip E. Long, Richard Dayvault, Ken Karp, Sam Marutzky, Donald R. Metzler, Aaron Peacock, David C. White, Mary Lowe, and Derek R. Lovley. 2003. Stimulated in situ removal of U(VI) from groundwater of a uranium-contaminated aquifer, Applied And Environmental Microbiology, p. 5884-5891, Vol. 69, No. 10.

D.A. Elias, L.R. Krumholz, D. Wong, P.E. Long, J.M. Suflita. 2003. Characterization of Microbial Activities and U Reduction in a Shallow Aquifer Contaminated by Uranium Mill Tailings. Microb Ecol 46:83-91.

Elias, D.A., J.M. Senko and L.R. Krumholz, 2003, A procedure for quantitation of total oxidized uranium for bioremediation studies. Journal Of Microbiological Methods 53 (3): 343-353.

Krumholz, L.R., D.A. Elias and J. M. Suflita, 2003. Immobilization of cobalt by sulfate-reducing bacteria in subsurface sediments. Geomicrobiology Journal 20 (1): 61-72.

Holmes, DA, Finneran, KT, O'Neil, RA, Lovley, DR, 2002 Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments. Appl. Environ. Microbiol. 68:2294-9.

Finneran, K. T., Housewright, M. R. & Lovley, D. R., 2002, Multiple influences of nitrate on uranium solubility during bioremediation of uranium-contaminated subsurface sediments. Environ. Microbiol. 4, 510-516.

Finneran, KT, Anderson, RT, Nevin, KP, Lovley DR, 2002, Bioremediation of uranium-contaminated aquifers with microbial U(VI) reduction, Soil and Sediment Contamination, 11: 339-357.

Krumholz, L.R., D.A. Elias and J. M. Suflita. 2002. Immobilization of cobalt by sulfate-reducing bacteria in subsurface sediments. Geomicrobiol. J. 19(4) (In press)

Chang, Yun-Juan; Aaron Peacock, Philip E. Long, John R. Stephen, James P. McKinley, Sarah J. Macnaughton, A. K. M. Anwar Hussain, Arnold M.Saxton, and David C. White. 2001. Diversity and Characterization of Sulfate-Reducing Bacteria in Groundwater at a Uranium Mill Tailings Site, Applied And Environmental Microbiology, v. 67 no. 7, p. 3149-3160.

Gruntzig V, Nold SC, Zhou J, Tiedje JM., 2001, Pseudomonas stutzeri nitrite reductase gene abundance in environmental samples measured by real-time PCR. Appl Environ Microbiol. 67(2):760-8.

Ivanova, I. A., Stephen, J. R., Chang, Y.-J., Bruggemann, J., Long, P. E., McKinley, J. P., Kowalchuk, G. A., White, D. C., and Macnaughton, S. J, 2000, A survey of 16S rRNA and amoA genes related to autotrophic ammonia-oxidizing bacteria of the ß-subdivision of the class proteobacteria in contaminated groundwater; Can. J. Microbiol. 46: 1012-1020.

Nevin, K.P., Lovley, D.R., (2000) Potential for nonenzymatic reduction of Fe(III) via electron shuttling in subsurface sediments. Environ. Sci. Technol. 34: 2472-2478.

Elias, D.A., J.M. Senko and L.R. Krumholz, 2003, A procedure for quantitation of total oxidized uranium for bioremediation studies. Journal of Microbiological Methods. (In press)

Krumholz, L.R., D.A. Elias and J. M. Suflita, 2003. Immobilization of cobalt by sulfate-reducing bacteria in subsurface sediments. Geomicrobiol. J. 20 (In press).

Holmes, DA, Finneran, KT, O'Neil, RA, Lovley, DR, 2002 Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments. Appl. Environ. Microbiol. 68:2294-9.

Finneran, K. T., Housewright, M. R. & Lovley, D. R., 2002, Multiple influences of nitrate on uranium solubility during bioremediation of uranium-contaminated subsurface sediments. Environ. Microbiol. 4, 510-516.

Finneran, KT, Anderson, RT, Nevin, KP, Lovley DR, 2002, Bioremediation of uranium-contaminated aquifers with microbial U(VI) reduction, Soil and Sediment Contamination, 11: 339-357.

Krumholz, L.R., D.A. Elias and J. M. Suflita. 2002. Immobilization of cobalt by sulfate-reducing bacteria in subsurface sediments. Geomicrobiol. J. 19(4) (In press)

Chang, Yun-Juan; Aaron Peacock, Philip E. Long, John R. Stephen, James P. McKinley, Sarah J. Macnaughton, A. K. M. Anwar Hussain, Arnold M.Saxton, and David C. White. 2001. Diversity and Characterization of Sulfate-Reducing Bacteria in Groundwater at a Uranium Mill Tailings Site, Applied And Environmental Microbiology, v. 67 no. 7, p. 3149-3160.

Gruntzig V, Nold SC, Zhou J, Tiedje JM., 2001, Pseudomonas stutzeri nitrite reductase gene abundance in environmental samples measured by real-time PCR. Appl Environ Microbiol. 67(2):760-8.

Ivanova, I. A., Stephen, J. R., Chang, Y.-J., Bruggemann, J., Long, P. E., McKinley, J. P., Kowalchuk, G. A., White, D. C., and Macnaughton, S. J, 2000, A survey of 16S rRNA and amoA genes related to autotrophic ammonia-oxidizing bacteria of the ß-subdivision of the class proteobacteria in contaminated groundwater; Can. J. Microbiol. 46: 1012-1020.

Nevin, K.P., Lovley, D.R., (2000) Potential for nonenzymatic reduction of Fe(III) via electron shuttling in subsurface sediments. Environ. Sci. Technol. 34: 2472-2478.

Abstracts:

Yun-Juan Chang, Aaron D. Peacock, Philip E. Long, Roland Geyer, Susan Pfiffner, Amanda Smithgall and David C. White. Stable Isotope Probing of U(VI) Bioreduction in Sediment Microcosms. Submitted for American Society for Microbiology 2005 General Meeting.

P. E. Long, Yun-Juan Chang, A. D. Peacock, Roland Geyer, S. Pfiffner, A. Smithgall, T. Resch, R. T. Anderson, H. A. Vrionis, R. Dayvault, I. Ortiz-Bernad, D. R. Lovely, D. C. White; 2005. Microbial Incorporation of 13C Labeled Acetate at the Field Scale: Detection of Microbes Responsible for Reduction of U (VI). Submitted for American Society for Microbiology 2005 General Meeting.

Kelvin Gregory, Derek Lovley. 2004. Electrode Enhanced Bioremediation of Uranium, American Society for Microbiology 2004 General Meeting (5/24/2004 through 5/27/2004), abstract ID 7516

Robert Anderson, Derek Lovley, Irene Ortiz-Bernad. 2004. Evaluating the Fate of Dissolved and Adsorbed Uranium in Aquifer Sediments under Fe(III)- and Sulfate-Reducing Conditions, American Society for Microbiology 2004 General Meeting (5/24/2004 through 5/27/2004), abstract ID 7518

Helen Vrionis, Robert Anderson, Irene Ortiz-Bernad, Charles Resch, Philip Long, Derek Lovley, 2004, Assessment of Three-Dimensional Distribution of Microbial Communities During Bioremediation of a Uranium-Contaminated Aquifer (abstract). American Society for Microbiology 2004 General Meeting 5/24/2004 through 5/27/2004, abstract ID 7521.

Robert Anderson, Helen Vrionis, Irene Ortiz-Bernad, Ryan Stattenfield, Philip Long, Charles Resch, Richard Dayvault, Derek Lovley, 2004, Potential for Prolonged Stimulation of In Situ U(VI) Removal from Groundwater (abstract). American Society for Microbiology 2004 General Meeting 5/24/2004 through 5/27/2004, abstract ID 7533.

David White, Aaron Peacock, Yun-Juan Chang, Roland Geyer, Jonathan Istok, Philip Long, Robert Anderson, 2004, Defining Conditions for Maximizing Bioreduction of Uranium Using In-situ Microcosms (abstract). American Society for Microbiology 2004 General Meeting 5/24/2004 through 5/27/2004, abstract ID 8845.

Williams, K.H., D. Ntarlagiannis, L. Slater, P. Long, A. Dohnalkova, S. S. Hubbard and J. F. Banfield, 2004, Remote Sensing of Subsurface Microbial Transformations (invited presentation), EOS Trans. AGU, 85(47), Fall Meet. Suppl., B51F-01, 2004.

K. Nevin, D. Holmes, K. J. Chin, D. Lovley, 2004, Molecular Analysis of Rates of Metal Reduction and Metabolic State of Geobacter Species During In Situ Uranium Bioremediation. Joint EU-US Workshop on Genomics and Environmental Biotechnology. Rockville, MD. March 2004.

Derek Lovley, Irene Ortiz-Bernad. 2003. Reduction of Vanadium (V) by Geobacter metallireducens, 2003 General Meeting (5/18/2003 through 5/22/2003), abstract ID 81443

R Anderson, P Long, D Lovley, M Lowe, I Ortiz-Bernad, C Resch, Helen Vrionis, G Xie. 2003. Comparison of Microbial Communities During in situ Bioremediation of a U(VI) Contaminated Aquifer, 2003 General Meeting (5/18/2003 through 5/22/2003), abstract ID 80820

Robert Anderson, Richard Dayvault, Ken Karp, Philip Long, Derek Lovley, Sam Marutzky, Irene Ortiz-Bernad, Charles Resch, Helen Vrionis. 2003. Bioremediation of Uranium via Stimulated In Situ U(VI) Reduction, 2003 General Meeting (5/18/2003 through 5/22/2003), abstract ID 80819

Peacock, A D; Anderson, R T; Chang, J; Long, P E; White, D C; 2002, Biostimulation of Metal-Reducing Microbes at a Former Uranium Mill Tailings Site. EOS Trans. AGU, 83(47), Fall Meet. Suppl., Abstract B51B-0716

Gihring, T M; Fredrickson, J K; McKinley, J P; Long, P E; 2002, Subsurface Microbial Communities and Geochemistry Within a Vertical Transect of a Uranium-Contaminated Aquifer. EOS, Transactions, AGU, 83(47), Fall Meet. Suppl., Abstract B11B-0740

Kevin Finneran, Dawn Holmes, Derek Lovley, Regina O'Neil. 2002. Enrichment of Geobacteraceae Associated with Stimulation of Dissimilatory Metal Reduction in Uranium-Contaminated Aquifer Sediments. American Society for Microbiology, 2002 General Meeting (5/19/2002 through 5/23/2002), abstract ID 63838

Kevin Finneran, Derek Lovley, Evgenya Shelobolina. 2002. Removal of Dissolved U(VI) Associated with Nitrate Reduction in a Low-pH, High-Nitrate Aquifer, 2002 General Meeting (5/19/2002 through 5/23/2002), abstract ID 63843

Anderson, R.T., Finneran, K.T., Jones, J., Istok, J.D., Wilson, T.C., Long, P.E., Lovley, D.R. (2002) Stimulated in situ removal of U(VI) from uranium-contaminated groundwater. ASM General Meeting, Salt Lake City, UT, May 19-23.

J.P. McKinley, P.E. Long, D. A. Elias and L.R. Krumholz. 2001, Chemical Evidence for Uranium bioreduction at Shiprock, New Mexico. EOS, Transactions, American Geophysical Union, 82(47) Fall meeting Supplement Abstract B42B-0133.

Finneran, K.T., Holmes, D.E., Snoeyenbos-West, O.L., Ciufo, S.A., VanPraagh, C.V.G., Long, P.E., Lovley, D.R. (2001) Geochemical and microbiological analysis of bioremediation of uranium-contaminated subsurface environments. ASM General Meeting, Orlando, FL, May 20-24.

Lloyd, J.R., Leang, C., Bunker, D., Livens, F., Glasauer, S., Lovley, D.R., (2001) Reduction of U(VI) by Geobacter sulfurreducens: Physiological characterization and capture of technetium by insoluble U(IV). ASM General Meeting, Orlando, FL, May 20-24.

Finneran, K.T., Forbush, H.M., Anderson, R.T., Long, P.E., Lovley, D.R. (2000) Microbiological and geochemical analysis of microbial uranium reduction in a uranium-contaminated aquifer. ASM General Meeting, Los Angeles, CA, May 21-25.

Elias, D., Wong, D., Senko, J., Long, P., McKinley, J., Sulfita, J., and Krumholz, L., 2000, Uranium Transformations in Contaminated Subsurface Sediments. EOS, Transactions, American Geophysical Union. vol 81, No. 48 p. F214.

Long, P. E., T. Anderson, D. Balkwill, D. Elias, J. Field, K. Finneran, C. Goodknight, J. Istok, L. Kinderman, L. Krumholz, D. Lovley, J. Mckinley, S. Macnaughton, S. Morrison, J. Stephen, J. M. Suflita, and D. C. White. 2000, Biogeochemistry and Bacterial Diversity of the Shiprock Uranium Mill Tailings Site, Shiprock, New Mexico, USA. 2nd Euroconference on Bacterial-Metal Radionuclide Interaction: Basic Research and Bioremediation, Program and Abstracts, pp. 38-40, Forschungszentrum Rossendorf, Germany.

D.A. Elias, L.R. Krumholz and J.M. Suflita. 2000, Characterization of microbial activities at the Uranium contaminated site of Shiprock, New Mexico. 50th Annual meeting of the Canadian Society of Microbiologists. Winnipeg, Manitoba Canada.

Long, Philip E., Dwayne Elias, Kevin Finneran, James K. Fredrickson, Craig Goodknight, Jonathan Istok, Lee R. Krumholz, Derek R. Lovley, James P. Mckinley, Stan Morrison, Joseph M. Suflita, and David C. White. 1999. Microbiological and Biogeochemical Characteristics of Subsurface Sediments at Uranium Mill Tailings Sites at Gunnison, Colorado and Shiprock, New Mexico: Implications for In Situ Remediation. International Symposium on Subsurface Microbiology, August 1999, Vail, CO, USA.

Peacock, A D; Anderson, R T; Chang, J; Long, P E; White, D C; 2002, Biostimulation of Metal-Reducing Microbes at a Former Uranium Mill Tailings Site. EOS Trans. AGU, 83(47), Fall Meet. Suppl., Abstract B51B-0716

Gihring, T M; Fredrickson, J K; McKinley, J P; Long, P E; 2002, Subsurface Microbial Communities and Geochemistry Within a Vertical Transect of a Uranium-Contaminated Aquifer. EOS, Transactions, AGU, 83(47), Fall Meet. Suppl., Abstract B11B-0740

Anderson, R.T., Finneran, K.T., Jones, J., Istok, J.D., Wilson, T.C., Long, P.E., Lovley, D.R. (2002) Stimulated in situ removal of U(VI) from uranium-contaminated groundwater. ASM General Meeting, Salt Lake City, UT, May 19-23.

J.P. McKinley, P.E. Long, D. A. Elias and L.R. Krumholz. 2001, Chemical Evidence for Uranium bioreduction at Shiprock, New Mexico. EOS, Transactions, American Geophysical Union, 82(47) Fall meeting Supplement Abstract B42B-0133.

Finneran, K.T., Holmes, D.E., Snoeyenbos-West, O.L., Ciufo, S.A., VanPraagh, C.V.G., Long, P.E., Lovley, D.R. (2001) Geochemical and microbiological analysis of bioremediation of uranium-contaminated subsurface environments. ASM General Meeting, Orlando, FL, May 20-24.

Lloyd, J.R., Leang, C., Bunker, D., Livens, F., Glasauer, S., Lovley, D.R., (2001) Reduction of U(VI) by Geobacter sulfurreducens: Physiological characterization and capture of technetium by insoluble U(IV). ASM General Meeting, Orlando, FL, May 20-24.

Finneran, K.T., Forbush, H.M., Anderson, R.T., Long, P.E., Lovley, D.R. (2000) Microbiological and geochemical analysis of microbial uranium reduction in a uranium-contaminated aquifer. ASM General Meeting, Los Angeles, CA, May 21-25.

Elias, D., Wong, D., Senko, J., Long, P., McKinley, J., Sulfita, J., and Krumholz, L., 2000, Uranium Transformations in Contaminated Subsurface Sediments. EOS, Transactions, American Geophysical Union. vol 81, No. 48 p. F214.

Long, P. E., T. Anderson, D. Balkwill, D. Elias, J. Field, K. Finneran, C. Goodknight, J. Istok, L. Kinderman, L. Krumholz, D. Lovley, J. Mckinley, S. Macnaughton, S. Morrison, J. Stephen, J. M. Suflita, and D. C. White. 2000, Biogeochemistry and Bacterial Diversity of the Shiprock Uranium Mill Tailings Site, Shiprock, New Mexico, USA. 2nd Euroconference on Bacterial-Metal Radionuclide Interaction: Basic Research and Bioremediation, Program and Abstracts, pp. 38-40, Forschungszentrum Rossendorf, Germany.

D.A. Elias, L.R. Krumholz and J.M. Suflita. 2000, Characterization of microbial activities at the Uranium contaminated site of Shiprock, New Mexico. 50th Annual meeting of the Canadian Society of Microbiologists. Winnipeg, Manitoba Canada.

Long, Philip E., Dwayne Elias, Kevin Finneran, James K. Fredrickson, Craig Goodknight, Jonathan Istok, Lee R. Krumholz, Derek R. Lovley, James P. Mckinley, Stan Morrison, Joseph M. Suflita, and David C. White. 1999. Microbiological and Biogeochemical Characteristics of Subsurface Sediments at Uranium Mill Tailings Sites at Gunnison, Colorado and Shiprock, New Mexico: Implications for In Situ Remediation. International Symposium on Subsurface Microbiology, August 1999, Vail, CO, USA.

Related book Chapters:

Anderson, R.T., Lovley, D.R. (2002) Microbial redox interactions with uranium: An environmental perspective. In Interactions of Microorganisms with Radionuclides, Vol. 2 ( F.R. Livens and M. Keith-Roach Eds). pp. 205-223. Elsevier Science Ltd. Amsterdam.

Krumholz, L.R. 2002, Microbiology of Cretaceous shales and sandstones of the Southwestern United States. In G. Bitton (ed.). Encyclopedia of Environmental Microbiology. John Wiley and Sons, New York, New York, p.2042-2047.

Long, Philip E., W. Timothy Griffin, and Tommy J. Phelps. 2002, Subsurface Samples: Collection, and Processing. In, Gabriel Bitton, Editor-in-Chief, Encyclopedia of Environmental Microbiology, John Wiley and Sons, New York, New York, p. 3071-3087.

Lovley, D.R., (2001) Reduction of iron and humics in subsurface environments. In Subsurface Microbiology and Biogeochemistry (J.K. Fredrickson, M. Fletcher Eds). pp. 193-217. Wiley-Liss, Inc.

Krumholz, L.R. and C.M. Brown. Deep Crustal Microbes. McGraw-Hill 2000 Yearbook of Science & Technology. Pg. 107-109.

Anderson, R.T., Lovley, D.R. (2002) Microbial redox interactions with uranium: An environmental perspective. In Interactions of Microorganisms with Radionuclides, Vol. 2 ( F.R. Livens and M. Keith-Roach Eds). pp. 205-223. Elsevier Science Ltd. Amsterdam.

Krumholz, L.R. 2002, Microbiology of Cretaceous shales and sandstones of the Southwestern United States. In G. Bitton (ed.). Encyclopedia of Environmental Microbiology. John Wiley and Sons, New York, New York, p.2042-2047.

Long, Philip E., W. Timothy Griffin, and Tommy J. Phelps. 2002, Subsurface Samples: Collection, and Processing. In, Gabriel Bitton, Editor-in-Chief, Encyclopedia of Environmental Microbiology, John Wiley and Sons, New York, New York, p. 3071-3087.

Lovley, D.R., (2001) Reduction of iron and humics in subsurface environments. In Subsurface Microbiology and Biogeochemistry (J.K. Fredrickson, M. Fletcher Eds). pp. 193-217. Wiley-Liss, Inc.

Krumholz, L.R. and C.M. Brown. Deep Crustal Microbes. McGraw-Hill 2000 Yearbook of Science & Technology. Pg. 107-109.

Theses and Dissertations:

Elias, Dwayne Anthony, (2002) The reduction of Uranium by Sulfate Reducing bacteria in the Terrestrial subsurface and a Pure Culture Bacterium. Ph.D. Dissertation, University of Oklahoma, Norman, OK.

Finneran, K.T., (2002) Novel anaerobic strategies for metal and organic contaminants. Ph.D. Dissertation, Dept. of Microbiology, University of Massachusetts, Amherst, MA.

Nevin, Kelly, (2002) Mechanisms of Fe(III) oxide reduction in the environment and in pure culture. Ph.D. Dissertation, Dept. of Microbiology, University of Massachusetts, Amherst, MA.

Elias, Dwayne Anthony, (2002) The reduction of Uranium by Sulfate Reducing bacteria in the Terrestrial subsurface and a Pure Culture Bacterium. Ph.D. Dissertation, University of Oklahoma, Norman, OK.

Finneran, K.T., (2002) Novel anaerobic strategies for metal and organic contaminants. Ph.D. Dissertation, Dept. of Microbiology, University of Massachusetts, Amherst, MA.