Skip to Main Content U.S. Department of Energy

Biological Sciences Staff information

Sean Colby

Computational Biology
Scientist
Pacific Northwest National Laboratory
PO Box 999
MSIN: J4-18
Richland, WA 99352
509/371-6912

PNNL Publications

2017

  • White RA, III, A Rivas-Ubach, MI Borkum, M Koberl, A Bilbao Pena, SM Colby, DW Hoyt, AK Bingol, YM Kim, JP Wendler, KK Hixson, and GC Jansson. 2017. "The state of rhizospheric science in the era of multi-omics: A practical guide to omics technologies." Rhizosphere 3(2):212-221.  doi:10.1016/j.rhisph.2017.05.003
  • White RA, III, AR Panyala, KA Glass, SM Colby, KR Glaesemann, GC Jansson, and JK Jansson. 2017. "MerCat: a versatile k-mer counter and diversity estimator for database-independent property analysis obtained from metagenomic and/or metatranscriptomic sequencing data." PeerJ Preprints 5:Article No. e2825v1.  doi:10.7287/peerj.preprints.2825v1
  • White RA, III, JM Brown, SM Colby, CC Overall, JY Lee, JD Zucker, KR Glaesemann, GC Jansson, and JK Jansson. 2017. "ATLAS (Automatic Tool for Local Assembly Structures) - A Comprehensive Infrastructure for Assembly, Annotation, and Genomic Binning of Metagenomic and Metaranscripomic Data." PeerJ Preprints 5:, doi:10.7287/peerj.preprints.2843v1
  • White RA, III, MI Borkum, A Rivas-Ubach, A Bilbao Pena, JP Wendler, SM Colby, M Koberl, and GC Jansson. 2017. "From data to knowledge: The future of multi-omics data analysis for the rhizosphere." Rhizosphere 3(2):222-229.  doi:10.1016/j.rhisph.2017.05.001

2016

  • Colby SM, S Kabilan, RE Jacob, AP Kuprat, DR Einstein, and RA Corley. 2016. "Comparison of realistic and idealized breathing patterns in computational models of airflow and vapor dosimetry in the rodent upper respiratory tract." Inhalation Toxicology 28(4):192-202.  doi:10.3109/08958378.2016.1150367
  • Kabilan S, SR Suffield, KP Recknagle, RE Jacob, DR Einstein, AP Kuprat, JP Carson, SM Colby, JH Saunders, S Hines, JG Teeguarden, TM Straub, M Moe, S Taft, and RA Corley. 2016. "Computational fluid dynamics modeling of Bacillus anthracis spore deposition in rabbit and human respiratory airways." Journal of Aerosol Science 99:64-77.  doi:10.1016/j.jaerosci.2016.01.011
  • Kabilan S, SR Suffield, KP Recknagle, RE Jacob, DR Einstein, AP Kuprat, JP Carson, SM Colby, JH Saunders, S Hines, JG Teeguarden, TM Straub, M Moe, S Taft, and RA Corley. 2016. "Computational Fluid Dynamics Modeling of Bacillus anthracis Spore Deposition in Rabbit and Human Respiratory Airways." Journal of Aerosol Science 99:64-77.  doi:10.1016/j.jaerosci.2016.01.011

2013

  • Jacob RE, SM Colby, S Kabilan, DR Einstein, and JP Carson. 2013. "In Situ Casting and Imaging of the Rat Airway Tree for Accurate 3D Reconstruction." Experimental Lung Research 39(6):249-257.  doi:10.3109/01902148.2013.801535

2012

  • Carson JP, AP Kuprat, SM Colby, CA Davis, C Basciano, K Greene, JT Feo, and A Kennedy. 2012. "Detecting Distance between Injected Microspheres and Target Tumor via 3D Reconstruction of Tissue Sections." In 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), August 28 - September 1, San Diego, California, pp. 1149-1152.  IEEE, Piscataway, NJ.  doi:10.1109/EMBC.2012.6346139

Biological Sciences

Science at PNNL

Research Highlights

View All BSD Highlights

Contacts